View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5413_high_43 (Length: 275)
Name: NF5413_high_43
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_high_43 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 31302132 - 31301876
Alignment:
| Q |
1 |
tatggttatgatcaatgtggctctcctatgcaccaacgtcacttcaaaccttaggccccctatgtcgtcaatcgtaagtatgcttgaaggaaggactgtg |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
31302132 |
tatggtgatgatcaatgtggctctcctatgcaccaacgtcacttcaaaccttaggccccctatgtcctcagtcgtaagtatgcttgaaggaaggactgtg |
31302033 |
T |
|
| Q |
101 |
gttccagaatttgtgccagattcaagtgaagtaatggatgaaaagaacatggaagtattgaggcagtattactatcagattgaagagaatagtacaagta |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
31302032 |
gttccagaatttgtgtcagattcaagtgaagtaatggatgaaaagaacatggaagtattgaggcagtattactatcagatggaagaaaatagtacaagta |
31301933 |
T |
|
| Q |
201 |
agtcacaaacacaaagtcagagtttattaattgatgggccatggactgctacatctt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31301932 |
agtcacaaacacaaagtcagagtttattaattgatgggccatggactgctacatctt |
31301876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 31312624 - 31312369
Alignment:
| Q |
2 |
atggttatgatcaatgtggctctcctatgcaccaacgtcacttcaaaccttaggccccctatgtcgtcaatcgtaagtatgcttgaaggaaggactgtgg |
101 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| | |||||||||| | |||||||||||||||||||| | ||||| |
|
|
| T |
31312624 |
atggtgatgatgaatgtggctctcctatgcaccaacgtcacttcaaactttaggacatctatgtcgtccgtggtaagtatgcttgaaggaagaaatgtgg |
31312525 |
T |
|
| Q |
102 |
ttccagaatttgtgccagattcaagtgaagtaatggatgaaaagaacatggaagtattgaggcagtattactatcagattgaagagaatagtacaagtaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| | |||| ||||||||| |
|
|
| T |
31312524 |
ttccagaatttgtgccagattcaagtgaagtaatggatgaaaagaagatgaaagtaatgaggcagtattactatcagattgacgcaaataatacaagtaa |
31312425 |
T |
|
| Q |
202 |
gtcacaaacacaaagtcagagtttattaattgatgggccatggactgctacatctt |
257 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
31312424 |
ttcacaaacggaaagtcagagtttaacaattgatgggccatggactgctacgtctt |
31312369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 31250661 - 31250405
Alignment:
| Q |
1 |
tatggttatgatcaatgtggctctcctatgcaccaacgtcacttcaaaccttaggccccctatgtcgtcaatcgtaagtatgcttgaaggaaggactgtg |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||| | |||||||| | ||||||||||||||||||| || ||| |
|
|
| T |
31250661 |
tatggtgatgatcaatgttgctctcctatgcaccaacctcacttcaaaccttaggccatcgatgtcgtccgtggtaagtatgcttgaaggaaataccgtg |
31250562 |
T |
|
| Q |
101 |
gttccagaatttgtgccagattcaagtgaagtaatggatgaaaagaacatggaagtattgaggcagtattactatcagattgaagagaatagtacaagta |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| || || |||||| | |||| ||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
31250561 |
gttccagaatttgtttcagattcaagtgaagtaatggatgagaaaaagttggaagcaatgagacagtattactatcagattgaagaaaataagacaagta |
31250462 |
T |
|
| Q |
201 |
agtcacaaacacaaagtcagagtttattaattgatgggccatggactgctacatctt |
257 |
Q |
| |
|
| ||||||||||||| ||| |||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
31250461 |
aatcacaaacacaaactcaaagtttattaactgatgggccatggactgcttcatctt |
31250405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 31352640 - 31352405
Alignment:
| Q |
2 |
atggttatgatcaatgtggctctcctatgcaccaacgtcacttcaaaccttaggccccctatgtcgtcaatcgtaagtatgcttgaaggaaggactgtgg |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| || |||| |
|
|
| T |
31352640 |
atggtgatgatcaatgtggctctcctatgcaccaatgtcacttcaaaccttaggccctctatgtcgtcagttgtaagtatgcttgaaggaagaaccgtgg |
31352541 |
T |
|
| Q |
102 |
ttccagaatttgtgccagattcaagtgaagtaatggatgaaaagaacatggaagtattgaggcagtattactatcagattgaagagaatagtacaagtaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| || || ||||||| | |||| ||||||||||||||||| ||||| || | | || || |
|
|
| T |
31352540 |
ttccagaatttgtgccagattcaagtaaagtaatggatggcaataagatggaagaaatgagacagtattactatcagatcgaagacaaaacgatgagcaa |
31352441 |
T |
|
| Q |
202 |
gtcacaaacacaaagtcagagtttattaattgatgg |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31352440 |
gtcacaaacacaaagtcagagtttattaagtgatgg |
31352405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 31241743 - 31241487
Alignment:
| Q |
1 |
tatggttatgatcaatgtggctctcctatgcaccaacgtcacttcaaaccttaggccccctatgtcgtcaatcgtaagtatgcttgaaggaaggactgtg |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| || ||| |
|
|
| T |
31241743 |
tatggtgatgatcaacgtggctctcctatgtaccaacgtcacttcaaaccttaggccccccatgtcgtcggttgtaagtatgcttgaaggaaataccgtg |
31241644 |
T |
|
| Q |
101 |
gttccagaatttgtgccagattcaagtgaagtaatggatgaaaagaacatggaagtattgaggcagtattactatcagattgaagagaatagtacaagta |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| || || |||||| | |||| ||||||| |||||||||||||| |||| | ||||| |
|
|
| T |
31241643 |
gttccagaatttgtttcagattcaagtgaagtaatggatgagaaaaagttggaagcaatgagaaagtattattatcagattgaagaaaataagataagta |
31241544 |
T |
|
| Q |
201 |
agtcacaaacacaaagtcagagtttattaattgatgggccatggactgctacatctt |
257 |
Q |
| |
|
| |||||||||||||||||| |||||||| |||||||| |||||||||| |||||| |
|
|
| T |
31241543 |
aaacacaaacacaaagtcagaatttattaactgatgggcaatggactgcttcatctt |
31241487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 31381414 - 31381242
Alignment:
| Q |
1 |
tatggttatgatcaatgtggctctcctatgcaccaacgtcacttcaaaccttaggccccctatgtcgtcaatcgtaagtatgcttgaaggaaggactgtg |
100 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||| ||||||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
31381414 |
tatggtgatgataaatgtggctctcctatgcaccaatgacacttcaaaccttaggccgtctatgtcatcagtggtaagtatgcttgaaggaaggactgtg |
31381315 |
T |
|
| Q |
101 |
gttccagaatttgtgccagattcaagtgaagtaatggatgaaaagaacatggaagtattgaggcagtattact |
173 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||| | |||||| ||||||||||||||| |
|
|
| T |
31381314 |
gttccagaatttgtttcagattcaagtgaagtaatggatgaacagaaacttgaagtaatgaggcagtattact |
31381242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 31370744 - 31370560
Alignment:
| Q |
2 |
atggttatgatcaatgtggctctcctatgcaccaacgtcacttcaaaccttaggccccctatgtcgtcaatcgtaagtatgcttgaaggaaggactgtgg |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||||| | |||||||||||||||||||||||||| | |
|
|
| T |
31370744 |
atggtgatgatcaatgtggctctcctatgtaccaatgtcacttcaaaccttaggccttcaatgtcgtccgttgtaagtatgcttgaaggaaggactgttg |
31370645 |
T |
|
| Q |
102 |
ttccagaatttgtgccagattcaagtgaagtaatggatgaaaagaacatggaagtattgaggcagtattactatcagattgaaga |
186 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||| || |||| |||||||| ||||||||||||||| |||||| ||||| |
|
|
| T |
31370644 |
ttccagaatttgtttcagattcaaatgaagtaatggataaacagaagttggaagtaatgaggcagtattactctcagatggaaga |
31370560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 31287548 - 31287377
Alignment:
| Q |
2 |
atggttatgatcaatgtggctctcctatgcaccaacgtcacttcaaaccttaggccccctatgtcgtcaatcgtaagtatgcttgaaggaaggactgtgg |
101 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||| |
|
|
| T |
31287548 |
atggtgatgatcaatgtgggtctcctatgcaccaatgacacttcaaaccttaggccgcctatgtcttcagtggtaagtatgcttgaaggaaggactgtgg |
31287449 |
T |
|
| Q |
102 |
ttccagaatttgtgccagattcaagtgaagtaatggatgaaaagaacatggaagtattgaggcagtattact |
173 |
Q |
| |
|
||||||||||||| |||| |||| |||||| |||||||||||||| || ||| | |||| |||||||||| |
|
|
| T |
31287448 |
ttccagaatttgtttcagaatcaaatgaagtgatggatgaaaagaagttgcaagaaatgagtcagtattact |
31287377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 31278044 - 31277873
Alignment:
| Q |
2 |
atggttatgatcaatgtggctctcctatgcaccaacgtcacttcaaaccttaggccccctatgtcgtcaatcgtaagtatgcttgaaggaaggactgtgg |
101 |
Q |
| |
|
||||| ||||| ||||| |||||||||||| |||| | |||||||||||||||||| ||||||| ||| | ||||||||||||||||||| |||||||| |
|
|
| T |
31278044 |
atggtgatgataaatgtcgctctcctatgcgccaatgacacttcaaaccttaggccgtctatgtcttcagtggtaagtatgcttgaaggaatgactgtgg |
31277945 |
T |
|
| Q |
102 |
ttccagaatttgtgccagattcaagtgaagtaatggatgaaaagaacatggaagtattgaggcagtattact |
173 |
Q |
| |
|
||||||||||||| || ||||||| ||||| ||||||||| |||| ||||| || ||||||||||||||| |
|
|
| T |
31277944 |
ttccagaatttgtttcatattcaagagaagtgatggatgaacagaagttggaaataatgaggcagtattact |
31277873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University