View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_high_49 (Length: 260)
Name: NF5413_high_49
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 23484380 - 23484634
Alignment:
| Q |
1 |
ccattttgaaaatgatgaaaaactcacgccaacaaaatgaataaattaagtgtttgttccaaacaaggtttattcgcaaattaatactacttcactctat |
100 |
Q |
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| T |
23484380 |
ccattttgaaaatgatgaaaaactcacgccaacaaaatgaataaattaagtgtttgttccaaacaaggtttattcgcaaattaatactacttcactctat |
23484479 |
T |
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| Q |
101 |
ttattcgtaaattaatattaatttactc---tgttcatatatgcaa-----ggagattcgaatccaaacacctctcttatattcactttaataggggaat |
192 |
Q |
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||||||| |||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23484480 |
ttattcgcaaattaatattaatttactctgttgttcatatatgtaagagttggagattcgaatccaaacacctctcttatattcactttaataggtgaat |
23484579 |
T |
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| Q |
193 |
ttttaatcaatagattgcttgacaaaaaataataataataacatactctcggtct |
247 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23484580 |
ttttaatcaatagactgcttgacaaaaaataataataataacatactctcggtct |
23484634 |
T |
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