View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5413_high_50 (Length: 256)
Name: NF5413_high_50
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_high_50 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 12020478 - 12020710
Alignment:
| Q |
1 |
ctatggttgttatttgccaccatcttcaaatctgaaaaacattatagt-caatgccaggaatcacaggtccttcagattattctaaagaacctattcgtc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12020478 |
ctatggttgttatttgccaccatcttcaaatctgaaaaacattatagaacaatgccaggaatcacaggtccttcagattattctaaagaacctattcgtc |
12020577 |
T |
|
| Q |
100 |
acccctctcttcaaattaactccaaggcaagctcaaattccattttcattatttattcacaaatttatttcctttttctataaccatatactatatacat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12020578 |
acccctctcttcaaattaactccaaggcaagctcaaattccattttcattatttattcacaaatttatttcctttttctataacc-------atatacat |
12020670 |
T |
|
| Q |
200 |
tgctatttatatcgagtttcaaatgattttaatgtatcgg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12020671 |
tgctatttatatcgagtttcaaatgattttaacgtatcgg |
12020710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 8474258 - 8474181
Alignment:
| Q |
49 |
caatgccaggaatcacaggtccttcagattattctaaagaacctattcgtcacccctctcttcaaattaactccaagg |
126 |
Q |
| |
|
||||||||||| | |||| || ||||||||||| |||||||| |||||| || ||||||||||| |||||||||| |
|
|
| T |
8474258 |
caatgccaggattaacagcaccatcagattattccaaagaaccacctcgtcatccttctcttcaaatcaactccaagg |
8474181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University