View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_high_52 (Length: 256)
Name: NF5413_high_52
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_high_52 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 702683 - 702920
Alignment:
| Q |
1 |
atatcattaaccgtaaccggtgtcacttttgaacccagtggatttgatgtgtttccttctttcactgagaaaaagaaatcatttggtgtagcaagctttg |
100 |
Q |
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| T |
702683 |
atatcattaactgtaaccggtgtcacttttgaacccagtggatttgatgtgtttccttcttttactgagaaaaagaaatcatttggtgtagcaagctttg |
702782 |
T |
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| Q |
101 |
gatccttgcagactttgccattcacaaaaactgcaaaacaaaatcattagataattaaataatatgttgtacttatatatgtatatatcattgttgtcaa |
200 |
Q |
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| T |
702783 |
gatccttgcaaaatttgccattcacaaaaactgcaaaacaaaatcattagataattagataatatgttctgcttatatatgtatatatcaatgttgtcaa |
702882 |
T |
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| Q |
201 |
acatgagatcgaacccgtgaaacttttgtatcatagtt |
238 |
Q |
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| T |
702883 |
acatgagatcgaacccgtgaaacttttgtatcatagtt |
702920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 712755 - 712518
Alignment:
| Q |
1 |
atatcattaaccgtaaccggtgtcacttttgaacccagtggatttgatgtgtttccttctttcactgagaaaaagaaatcatttggtgtagcaagctttg |
100 |
Q |
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| T |
712755 |
atatcattaactgtaaccggtgtcacttttgaacccagtggatttgatatgtttccttctttcactgagaaaaaaaaatcatttggtgtagcaagctttg |
712656 |
T |
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| Q |
101 |
gatccttgcagactttgccattcacaaaaactgcaaaacaaaatcattagataattaaataatatgttgtacttatatatgtatatatcattgttgtcaa |
200 |
Q |
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| T |
712655 |
gatccttgcaaaatttgccattcacaaaaactgcaaaacaaaatcattagataattaaataatatgttctacttatatatgtatatatcaaagttgtcat |
712556 |
T |
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| Q |
201 |
acatgagatcgaacccgtgaaacttttgtatcatagtt |
238 |
Q |
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| T |
712555 |
acatgagatcaaacccgtgaaacttttgtatcatagtt |
712518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 717985 - 718133
Alignment:
| Q |
1 |
atatcattaaccgtaaccggtgtcacttttgaacccagtggatttgatgtgtttccttctttcactgagaaaaagaaatcatttggtgtagcaagctttg |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
717985 |
atatcattaactgtaaccggtgtcacttttgaacccagtggatttgatgtgtttccttcttttactgagaaaaagaaatcatttggtgtagcaagctttg |
718084 |
T |
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| Q |
101 |
gatccttgcagactttgccattcacaaaaactgcaaaacaaaatcatta |
149 |
Q |
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| T |
718085 |
gatccttgcagactttgccattcacaaaaactgcaaaacaaattcatta |
718133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 710952 - 711114
Alignment:
| Q |
1 |
atatcattaaccgtaaccggtgtcacttttgaacccagtggatttgatgtgtttccttctttcactgagaaaaagaaatcatttggtgtagcaagctttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
710952 |
atatcattaaccgtaaccggtgtcacttttgaacccagtggatttgatgtgtttccttctttcactgagaaaaagaaatcatttggtgtagcaagctttg |
711051 |
T |
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| Q |
101 |
gatccttgcagactttgccattcacaaaaactgcaaaacaaaatcattagataattaaataata |
164 |
Q |
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||| ||| |||| |||||| |||||||| ||||||||| |||||||| | |||||||||||||| |
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| T |
711052 |
gattcttacagaatttgccgttcacaaacactgcaaaa-aaaatcatcatataattaaataata |
711114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 716594 - 716513
Alignment:
| Q |
20 |
gtgtcacttttgaacccagtggatttgatgtgtttccttctttcactgagaaaaagaaatcatttggtgtagcaagctttgg |
101 |
Q |
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| T |
716594 |
gtgtcacttgcgaaccaagttgacttgatatgttttcttcttttattgagaaaaagaaatcatctggtgtaacaagttttgg |
716513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 722441 - 722384
Alignment:
| Q |
54 |
tccttctttcactgagaaaaagaaatcatttggtgtagcaagctttggatccttgcag |
111 |
Q |
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| T |
722441 |
tccttcttttactgagaaaaagaaatcatctgctgtaacaagttttggatctttgcag |
722384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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