View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_high_57 (Length: 250)
Name: NF5413_high_57
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_high_57 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 19641193 - 19640950
Alignment:
| Q |
1 |
ctacaacgatcttggtttttagaattttgcaggtgataaaagttaaatatatgatagcaaattttaacgtgacctatctagctatcatataacagatttc |
100 |
Q |
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| T |
19641193 |
ctacaacgatcttggtttttagaattttgcaggtgataaaagttaaatatattatagcaaattttaacatgacctagctagctatcatataacaaatttc |
19641094 |
T |
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| Q |
101 |
tatttttaccttctcgaaaagaataagcaattgaagcaattcgtgtgtttgttatatacgatcacaggcaaatcgaccgggactgtgagcttctggaaca |
200 |
Q |
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| T |
19641093 |
tatttttaccttctcgaaaagaataagaaattgaaccatgtcatgtgtttgttatatatgatcacaggcaaatcgaccgggactgtgagcttctggaaca |
19640994 |
T |
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| Q |
201 |
ggagggaattatggactatagtctactagttggcattcatttca |
244 |
Q |
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| T |
19640993 |
ggagggaattatggactatagtctactagttggcattcatttca |
19640950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 35259167 - 35259227
Alignment:
| Q |
184 |
tgtgagcttctggaacaggagggaattatggactatagtctactagttggcattcatttca |
244 |
Q |
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| T |
35259167 |
tgtgagcttctagaacaagagggaattatggactatagtctgctacttggcattcatttca |
35259227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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