View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5413_high_63 (Length: 244)

Name: NF5413_high_63
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5413_high_63
NF5413_high_63
[»] scaffold0015 (2 HSPs)
scaffold0015 (13-244)||(32101-32332)
scaffold0015 (13-244)||(40153-40384)
[»] chr7 (1 HSPs)
chr7 (13-148)||(1420944-1421079)
[»] chr1 (15 HSPs)
chr1 (47-148)||(24233226-24233326)
chr1 (25-124)||(25610756-25610855)
chr1 (13-133)||(45692670-45692782)
chr1 (13-125)||(24227451-24227563)
chr1 (23-127)||(24513224-24513331)
chr1 (18-78)||(24233158-24233218)
chr1 (13-148)||(24626538-24626676)
chr1 (16-69)||(24242629-24242682)
chr1 (23-119)||(23895928-23896024)
chr1 (27-134)||(24634585-24634695)
chr1 (23-132)||(24221772-24221881)
chr1 (78-127)||(24629018-24629067)
chr1 (28-134)||(24804853-24804959)
chr1 (23-68)||(23898455-23898500)
chr1 (25-134)||(25869046-25869155)
[»] chr4 (1 HSPs)
chr4 (25-127)||(11033105-11033210)
[»] chr5 (1 HSPs)
chr5 (35-134)||(3181878-3181977)
[»] chr8 (1 HSPs)
chr8 (13-125)||(23772865-23772977)


Alignment Details
Target: scaffold0015 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 32101 - 32332
Alignment:
Q  13 aatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttgga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32101 aatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttacagtatcatttttgga 32200  T
Q  113 atcgtaaacaacccaattcaatctacgatcctctctgatcatagacagcatgtggttgtcatcattggaaatatatattatcttcgtattaagagtgtag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32201 atcgtaaacaacccaattcaatctacgatcctctctgatcatagacaacatgtggttgtcatcattggaaatatatattatcttcgtattaagagtgtag 32300  T
Q  213 cggtaatcagcaaaggaaggaagacaaatcaa 244  Q
    ||||||||||||||||||||||||| ||||||    
T  32301 cggtaatcagcaaaggaaggaagacgaatcaa 32332  T

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Target: scaffold0015; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 40153 - 40384
Alignment:
Q  13 aatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttgga 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40153 aatattatagtcaaggtgatatcaaacttaccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttacagtatcatttttgga 40252  T
Q  113 atcgtaaacaacccaattcaatctacgatcctctctgatcatagacagcatgtggttgtcatcattggaaatatatattatcttcgtattaagagtgtag 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40253 atcgtaaacaacccaattcaatctacggtcctctctgatcatagacagcatgtggttgtcatcattggaaatatatattatcttcgtattaagagtgtag 40352  T
Q  213 cggtaatcagcaaaggaaggaagacaaatcaa 244  Q
    ||||||||||||||||||||||||| ||||||    
T  40353 cggtaatcagcaaaggaaggaagacgaatcaa 40384  T

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Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 1420944 - 1421079
Alignment:
Q  13 aatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttgga 112  Q
    ||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||    
T  1420944 aatattataatcaaggtgatatcaaactttcaacatagacttctgattctacccaactcaagtcttgaatcttcaaattctttatagtatcattttttga 1421043  T
Q  113 atcgtaaacaacccaattcaatctacgatcctctct 148  Q
    ||| ||||||  ||| |||||| |||||||||||||    
T  1421044 atcataaacagtccacttcaatttacgatcctctct 1421079  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 24233226 - 24233326
Alignment:
Q  47 gtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacccaattcaatctacgatcctct 146  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||||| || |||||||||||||||    
T  24233226 gtagactcttggttctacccaattcaagtcttgaatcttcaaacacttaatagtatca-ttttgcaatcgtaaacaacccactttaatctacgatcctct 24233324  T
Q  147 ct 148  Q
    ||    
T  24233325 ct 24233326  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 25610756 - 25610855
Alignment:
Q  25 aaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaac 124  Q
    ||||| ||||||||||||| |||||||| |||||||||||| || |||| |||| ||||||  ||||||||||||||||||||||| |||| || |||||    
T  25610756 aaggttatatcaaactttcaacgtagacatttgattctaccaaactcaaatcttcaatcttggaactctttatagtatcatttttgcaatcatacacaac 25610855  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 45692670 - 45692782
Alignment:
Q  13 aatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttgga 112  Q
    ||||||||| | ||||||||||||||||||  | |||||||||||| ||||||||| ||||||||||       ||| |||||||| |||||||||||||    
T  45692670 aatattataattaaggtgatatcaaactttgaatgtagacttttgaatctacccaactcaagtcttg-------aaattctttata-tatcatttttgga 45692761  T
Q  113 atcgtaaacaacccaattcaa 133  Q
    ||| ||||||||||| |||||    
T  45692762 atcataaacaacccacttcaa 45692782  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 24227451 - 24227563
Alignment:
Q  13 aatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttgga 112  Q
    |||||||||  || ||||||||||||||||||||||||||   ||||| || | ||| |||| ||||||||||| |||||||||| | |||||||||  |    
T  24227451 aatattataaacagggtgatatcaaactttccacgtagaccgctgattttatcaaatccaagacttgaatcttcgaactctttatggaatcattttttta 24227550  T
Q  113 atcgtaaacaacc 125  Q
    |||||||| ||||    
T  24227551 atcgtaaataacc 24227563  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 24513331 - 24513224
Alignment:
Q  23 tcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtc---ttgaatcttcaaactctttatagtatcatttttggaatcgtaa 119  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| |  ||| ||    ||| ||||||| ||  |||||||||||||||||||||| |||    
T  24513331 tcaaggtgatatcaaactttcaacgtagacttttgactctacccgacacaaatcattctgagtcttcaatcttattatagtatcatttttggaatcataa 24513232  T
Q  120 acaaccca 127  Q
    || |||||    
T  24513231 acgaccca 24513224  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 24233158 - 24233218
Alignment:
Q  18 tatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtctt 78  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||    
T  24233158 tataatcaaggtgatatcaaactttcaacgtagacttttgattcaacccaacccaagtctt 24233218  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 24626538 - 24626676
Alignment:
Q  13 aatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttg---aatcttcaaactctttatagtatcattttt 109  Q
    ||||||||  |||||||||||| || ||||| || || |||| |||||||||||  ||||||||||    |||||| ||||||||| | ||||||||  |    
T  24626538 aatattatcatcaaggtgatattaagctttcaacatatacttctgattctacccgtttcaagtcttctttaatctttaaactctttgtggtatcattcat 24626637  T
Q  110 ggaatcgtaaacaacccaattcaatctacgatcctctct 148  Q
    ||||||||||| |||||| |||||| || | ||||||||    
T  24626638 ggaatcgtaaaaaacccacttcaatgtatggtcctctct 24626676  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 24242629 - 24242682
Alignment:
Q  16 attatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaat 69  Q
    |||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  24242629 attataatcaaggtgatatcaaactttcaacgtagatttttgattgtacccaat 24242682  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 23895928 - 23896024
Alignment:
Q  23 tcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaa 119  Q
    |||||| |||||||||||||| || |||||  | ||||||||  || || ||||||| ||||| ||  |||||||||||||||||||||||| ||||    
T  23895928 tcaaggagatatcaaactttcaacatagacagtggattctacagaactccagtcttgcatcttgaatttctttatagtatcatttttggaattgtaa 23896024  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 24634585 - 24634695
Alignment:
Q  27 ggtgatatcaaactttccacgtagacttttgattctacccaattcaagtctt---gaatcttcaaactctttatagtatcatttttggaatcgtaaacaa 123  Q
    ||||||||||||||||| |||||||||||||| |||| |  |  |||||  |   || ||||||||||  |||||||||||||||||||||| ||||| |    
T  24634585 ggtgatatcaaactttcaacgtagacttttgactctatctgacacaagttgttctgagtcttcaaactgattatagtatcatttttggaatcataaacga 24634684  T
Q  124 cccaattcaat 134  Q
    |||| ||||||    
T  24634685 cccacttcaat 24634695  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 24221772 - 24221881
Alignment:
Q  23 tcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaaca 122  Q
    ||||||||||| |||||| || | ||||||  |||| ||||||||| | |||||||| ||||| | | |||||||||||  ||||||| |||| |||||     
T  24221772 tcaaggtgataccaaactctcaatgtagaccattgagtctacccaactgaagtcttggatcttgatagtctttatagtactatttttgcaatcataaacg 24221871  T
Q  123 acccaattca 132  Q
    ||||| ||||    
T  24221872 acccacttca 24221881  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 24629018 - 24629067
Alignment:
Q  78 tgaatcttcaaactctttatagtatcatttttggaatcgtaaacaaccca 127  Q
    |||||||| |||||||||||||||| |||||| |||||| ||||||||||    
T  24629018 tgaatcttgaaactctttatagtataatttttagaatcgcaaacaaccca 24629067  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 24804853 - 24804959
Alignment:
Q  28 gtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaaccca 127  Q
    |||||| |||||| || || || |||||||| |||||| || || |||||||| |||| | | || ||  |||||||||||||||||| |||||| ||||    
T  24804853 gtgataccaaactctcaacataaacttttgaatctaccaaactccagtcttgagtcttgatattccttgaagtatcatttttggaatcataaacagccca 24804952  T
Q  128 attcaat 134  Q
     ||||||    
T  24804953 tttcaat 24804959  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 23898455 - 23898500
Alignment:
Q  23 tcaaggtgatatcaaactttccacgtagacttttgattctacccaa 68  Q
    |||||||||||||||||| || |||||||||||||| | |||||||    
T  23898455 tcaaggtgatatcaaactctcaacgtagacttttgaatttacccaa 23898500  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 25869046 - 25869155
Alignment:
Q  25 aaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaac 124  Q
    ||||||||| |||||| || |||||||  ||||| ||||||||| | ||||||| |||||| | | || || |||| | || ||||  ||||||||||||    
T  25869046 aaggtgataccaaactctcaacgtagagctttgagtctacccaactgaagtcttcaatcttgatagtccttgtagtgtgatatttgcgatcgtaaacaac 25869145  T
Q  125 ccaattcaat 134  Q
    ||| ||||||    
T  25869146 ccacttcaat 25869155  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 11033210 - 11033105
Alignment:
Q  25 aaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtct---tgaatcttcaaactctttatagtatcatttttggaatcgtaaac 121  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||   ||||||   |||||||| |||||||||||||||| |||||| |||||| ||||    
T  11033210 aaggtgatatcaaactttcaacgtagacttttgattctaaccaaccaaagtctttctgaatcttgaaactctttatagtataatttttagaatcgcaaac 11033111  T
Q  122 aaccca 127  Q
    ||||||    
T  11033110 aaccca 11033105  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 3181977 - 3181878
Alignment:
Q  35 caaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacccaattcaat 134  Q
    |||||| || |||||||||||||||||||||||| | ||||||||| ||||   ||||||||||  | |||||| |||||||||||||||||| ||||||    
T  3181977 caaactctcaacgtagacttttgattctacccaactaaagtcttgactcttggcactctttataaaaccattttcggaatcgtaaacaacccacttcaat 3181878  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 23772977 - 23772865
Alignment:
Q  13 aatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttgga 112  Q
    |||||||||  || ||||||||||||||||||||||||||   ||||| || | ||| |||| ||||||||||| |||||||||| | |||||||||  |    
T  23772977 aatattataaacagggtgatatcaaactttccacgtagaccgctgattttatcaaatccaagacttgaatcttcgaactctttatggaatcattttttta 23772878  T
Q  113 atcgtaaacaacc 125  Q
    |||||||| ||||    
T  23772877 atcgtaaataacc 23772865  T

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