View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_high_70 (Length: 239)
Name: NF5413_high_70
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_high_70 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 34953160 - 34952943
Alignment:
| Q |
22 |
acttatgagaagtgatgcccgttgatgatagaatttcaactaattttcgaccataaactatataaaacactttgttatctttgacatcggctacattatg |
121 |
Q |
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| T |
34953160 |
acttatgagaagtgatgcccgttgatgatagaatttcaagtaattttcgaccataaactatataaagcactttgttatcttagacatcggctacattatg |
34953061 |
T |
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| Q |
122 |
gtccnnnnnnntttaggattacttcttataaaagaaacaattcactttaaaggagaaaataaagtaatcttaattgtgaataaataaattaggctaaaaa |
221 |
Q |
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| T |
34953060 |
atccaaaaaaatttaggattgcttcttataaaagaaacaattcactttaaaggaaaaaataaagtaatcttaattgtgaataaataaattaggctaaaaa |
34952961 |
T |
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| Q |
222 |
accgttttgatcctttat |
239 |
Q |
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| T |
34952960 |
attcttttgatcctttat |
34952943 |
T |
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