View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5413_low_1 (Length: 1312)
Name: NF5413_low_1
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 1129; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1129; E-Value: 0
Query Start/End: Original strand, 98 - 1304
Target Start/End: Original strand, 50254673 - 50255879
Alignment:
| Q |
98 |
tgtggatttggatgaaaaggaagagtttgatttggtgcagtttatgcgtgataagggtgaggtttgggatcagattgtggaggagtatggacttcataag |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50254673 |
tgtggatttggatgaaaaggaagagtttgatttggtgcagtttatgcgtgataagggtgaggtttgggatcagattgtggaggagtatggacttcataag |
50254772 |
T |
|
| Q |
198 |
atcaaattggaggaaattgcttgttttgaagccttggtgccagtttttcgatttgagtttcaacttgtatctagtatgaataagagtaaaaattatgagn |
297 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50254773 |
accaaattggaggaaattgcttgttttgatgccttggtgccagtttttcgatttgagtttcaacttgtatctagtatgaataagagtaaaaattatgagt |
50254872 |
T |
|
| Q |
298 |
nnnnnngagtatgctgagacgtttaatagtgtgaaattctgggtgatgaagctgagggagatgaatctcatacccatctacgaacattgaactacattgt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50254873 |
ttttt-gagtatgctgagacgtttaatagtgtgaaattctgggtgatgaagctgagggagatgaatctcatacccatctacgaacattgaactacattgt |
50254971 |
T |
|
| Q |
398 |
tgtttttatctctctcttgtaataatatcgtttgtttctatctgctttatgtattgttaaaaatctttttcacctaacaagagttaataatgcccattcc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50254972 |
tgtttttatctctctcttgtaataatatcgtttgtttctatctgctttatgtattgttaaaaatctttttcacctaacaagagttaataatgcccattcc |
50255071 |
T |
|
| Q |
498 |
tttcttttgaatgttgaattggatattgatggagttttagcacattattttagtttttgttagttcatttgtttcttgaggcctatactcagtgaaataa |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50255072 |
tttcttttgaatgttgaattggatattgatggagttttagcacattattttagtttttgttagttcatttgtttcttgaggcctatactcagtgaaataa |
50255171 |
T |
|
| Q |
598 |
aaaggagaactacacttatttaccttactgtcttcttnnnnnnn-tcacacccctctgaatttggcaataggacagaaaaaatactgttttattctacat |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50255172 |
aaaggagaactacacttatttaccttactgtcttcttaaaaaaaatcacacccctctgaatttggcaataggacagaaaaaatactgttttattctacat |
50255271 |
T |
|
| Q |
697 |
tcaaataatcataacaatttttacaactcattaaaaagctttttgtatcaatcaaggagcattttctgaaatatattactgtgaactgaaaggtagtatc |
796 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50255272 |
tcaaataatcataacaatttttacaactcattaaaaagctttttgtatcaatcaaggagcattttctgaaatatattactgtgaactgaaaggtagtatc |
50255371 |
T |
|
| Q |
797 |
caaattgcataatgggataaaaacattgagctgcttttaagaacagctaaaagcttttattattatagaacactaaatcttactgattattacaaattct |
896 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50255372 |
caaattgcataatgagataaaaacattgagctgcttttaagaacagctaaaagcttttattattatagaacactaattcttactgattattacaaattct |
50255471 |
T |
|
| Q |
897 |
aataacacatcacataccagcaagaacaagtagcttttatcgacattatcactctaatatgattacaacttgctcatcttgagaggtcccatctcctttg |
996 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50255472 |
aataacacatcacataccagcaagaacaagtagcttttatcgacattatcactctaatatgattacaacttgctcgtcttgagaggtcccatctcctttg |
50255571 |
T |
|
| Q |
997 |
ccttagccctcagcagatgcttctgtaccttcccagtagctgtcttaggtaacggtccaaagacaactgatttcggtacccaataagtaggcatcttggc |
1096 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50255572 |
ccttagccctcagcagatgcttctgtaccttcccagtagctgtcttaggtaacggtccaaagacaaccgatttcggtacccaataagtaggcatcttggc |
50255671 |
T |
|
| Q |
1097 |
cctacagaacttcagtatgtcctcgactagacgttgctcgttactcctatccactcctggctttaatgtcacaaacgcacacggagactcgccccatttc |
1196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50255672 |
cctacagaacttcagtatgtcctcgactagacgttgctcgttactcctatccactcctggctttaatgtcacaaacgcacacggagactcgccccatttc |
50255771 |
T |
|
| Q |
1197 |
tcgtctggtctagcgaccactgatgtctcaagtatagcaggatgcgagtacagagcattctctacctctacactgctgatattttcagcacctgagatga |
1296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50255772 |
tcgtctggtctagcgaccactgatgtctcaagtatagcaggatgcgagtacagagcattctctacctctacactgctgatattttcagcacctgagatga |
50255871 |
T |
|
| Q |
1297 |
tgatgtcc |
1304 |
Q |
| |
|
|||||||| |
|
|
| T |
50255872 |
tgatgtcc |
50255879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 9e-61
Query Start/End: Original strand, 98 - 406
Target Start/End: Complemental strand, 27643355 - 27643048
Alignment:
| Q |
98 |
tgtggatttggatgaaaaggaagagtttgatttggtgcagtttatgcgtgataagggtgaggtttgggatcagattgtggaggagtatggacttcataag |
197 |
Q |
| |
|
|||||| ||| |||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||||| | |||||||||||| ||||| ||||||||| |
|
|
| T |
27643355 |
tgtggagttgaatgacaaggaagagtttgatttggtggagttaatgcgtgataagggtgagatttgggacctgattgtggaggaatatgggcttcataag |
27643256 |
T |
|
| Q |
198 |
atcaaattggaggaaattgcttgttttgaagccttggtgccagtttttcgatttgagtttcaacttgtatctagtatgaataagagtaaaaattatgagn |
297 |
Q |
| |
|
| |||||||||||||||||||| |||||||| |||||||||| | || ||| ||||||||| ||||||||||||||| || ||||| |||||| | |
|
|
| T |
27643255 |
accaaattggaggaaattgcttcctttgaagcaacggtgccagttctgcggtttcagtttcaacatgtatctagtatgaacaaaagtaaggattatg-gg |
27643157 |
T |
|
| Q |
298 |
nnnnnngagtatgctgagacgtttaatagtgtgaaattctgggtgatgaagctgagggagatgaatctcatacccatctacgaacattgaactacattgt |
397 |
Q |
| |
|
|||||||| || |||||||| ||| | | |||||||||| ||| ||||||||||||| ||||||||| ||||| ||||||||| | |||||| |
|
|
| T |
27643156 |
ttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagttgagggagatgaaactcatacccgtctacaaacattgaattgcattgt |
27643057 |
T |
|
| Q |
398 |
tgtttttat |
406 |
Q |
| |
|
||||||||| |
|
|
| T |
27643056 |
tgtttttat |
27643048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 105 - 372
Target Start/End: Original strand, 50247543 - 50247809
Alignment:
| Q |
105 |
ttggatgaaaaggaagagtttgatttggtgcagtttatgcgtgataagggtgaggtttgggatcagattgtggaggagtatggacttcataagatcaaat |
204 |
Q |
| |
|
|||||||| || |||||||||||| | | |||| |||||||| ||||||||||||||||| |||||| ||| | ||||| |||||||||| ||| | |
|
|
| T |
50247543 |
ttggatgataaagaagagtttgatatcattgagttgatgcgtgacaagggtgaggtttgggacttgattgtagagaaatatgggcttcataagaccaagt |
50247642 |
T |
|
| Q |
205 |
tggaggaaattgcttgttttgaagccttggtgccagtttttcgatttgagtttcaacttgtatctagtatgaataagagtaaaaattatgagnnnnnnng |
304 |
Q |
| |
|
|| ||||||||||||| ||||||||| ||||||||||| | || ||||||||||||| ||||||||||||||| ||||||||| |||||| | | |
|
|
| T |
50247643 |
tgaaggaaattgcttgctttgaagccatggtgccagttgtacggtttgagtttcaacatgtatctagtatgaacaagagtaaagattatg-ggtttttag |
50247741 |
T |
|
| Q |
305 |
agtatgctgagacgtttaatagtgtgaaattctgggtgatgaagctgagggagatgaatctcataccc |
372 |
Q |
| |
|
|||||||||| |||||||| ||| | ||| |||||||| ||||||||||||||||| || |||||| |
|
|
| T |
50247742 |
agtatgctgatacgtttaagagtatcaaactctgggtggctaagctgagggagatgaaacttataccc |
50247809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 50254557 - 50254641
Alignment:
| Q |
19 |
gtatgggctgcagttacaaagaaggctaagaaccaagcgtttaattgcacaaatggtgacgttttcgcatggaagagtatgtgga |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50254557 |
gtatgggctgcagttacaaagaaggctaagaaccaagcgtttaattgcacaaatggtgacgttttcgcatggaagagtatgtgga |
50254641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 50247423 - 50247505
Alignment:
| Q |
22 |
tgggctgcagttacaaagaaggctaagaaccaagcgtttaattgcacaaatggtgacgttttcgcatggaagagtatgtggat |
104 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| |||||||| ||||| |||||| ||||| | ||||||||||||||||| |
|
|
| T |
50247423 |
tgggctggagttacaaagaaagctaagaaccaagcatttaattgtacaaacggtgacattttcacttggaagagtatgtggat |
50247505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 27643468 - 27643386
Alignment:
| Q |
22 |
tgggctgcagttacaaagaaggctaagaaccaagcgtttaattgcacaaatggtgacgttttcgcatggaagagtatgtggat |
104 |
Q |
| |
|
||||||||||||||| | | || ||||||||||| || ||||||||||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
27643468 |
tgggctgcagttacagaagatgcgaagaaccaagctttcaattgcacaaatggtgatgttttcacttggaagagtatgtggat |
27643386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 388
Target Start/End: Complemental strand, 27646327 - 27646272
Alignment:
| Q |
333 |
attctgggtgatgaagctgagggagatgaatctcatacccatctacgaacattgaa |
388 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
27646327 |
attctgggtggctaagctgagggagatgaaactcatacccttctaccaacattgaa |
27646272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 6e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 6e-68
Query Start/End: Original strand, 955 - 1294
Target Start/End: Complemental strand, 19214000 - 19213661
Alignment:
| Q |
955 |
atgattacaacttgctcatcttgagaggtcccatctcctttgccttagccctcagcagatgcttctgtaccttcccagtagctgtcttaggtaacggtcc |
1054 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
19214000 |
atgattacaacttgctcatcttggcagaccccatctcctttgccttagccctcaacagattcttctgtatcttcccagtagctgtcttaggtaatggtcc |
19213901 |
T |
|
| Q |
1055 |
aaagacaactgatttcggtacccaataagtaggcatcttggccctacagaacttcagtatgtcctcgactagacgttgctcgttactcctatccactcct |
1154 |
Q |
| |
|
||| ||||||||||| || ||| ||||| || |||||| ||| |||| || ||| ||| ||||| |||| || | || ||||| |||||||||| | |
|
|
| T |
19213900 |
aaacacaactgattttgggaccatataagaagacatcttagccttacaaaaactcaatatatcctcaactaaacacttttcattactactatccactctt |
19213801 |
T |
|
| Q |
1155 |
ggctttaatgtcacaaacgcacacggagactcgccccatttctcgtctggtctagcgaccactgatgtctcaagtatagcaggatgcgagtacagagcat |
1254 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||||||||| ||||| || || |||||||||| || | ||| ||| |||| ||||||| || | |
|
|
| T |
19213800 |
ggctttaatgtcacaaatgcacatggagactcaccccatttctcatctggccttgcaaccactgatgcttccaatattgcatgatgtgagtacaaagtac |
19213701 |
T |
|
| Q |
1255 |
tctctacctctacactgctgatattttcagcacctgagat |
1294 |
Q |
| |
|
|||||| ||||||||||| ||||||||| |||||||||| |
|
|
| T |
19213700 |
tctctatttctacactgctaatattttcaccacctgagat |
19213661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University