View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_14 (Length: 448)
Name: NF5413_low_14
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 9 - 430
Target Start/End: Original strand, 9368420 - 9368843
Alignment:
| Q |
9 |
aattattcttcgtttttaaagaaactaaactaatctacctaaattgacatcggaaaaagtaaaacatgaaattttgagaaggagcaacttctaagtctta |
108 |
Q |
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| T |
9368420 |
aattattcttcgtttttaaaaaaactaaactaatctacctaaattgacatcggagaaagtaaaacatgaaatcttgagaaggagcaactcctaactctta |
9368519 |
T |
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| Q |
109 |
agccaatacggtgagatcaaccgtgcaaaccgatgtgaaatcttgtttttaaccaatgtgaaatcccctttctgtaa---tagtggacnnnnnnnngaat |
205 |
Q |
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| T |
9368520 |
agtcaatacggtgagaccaaccgtgcaaaccgatgtgaaatcttgtttttaaccaatgtgaaatcctctttctgtaatactagtggacaaaaaaatgaaa |
9368619 |
T |
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| Q |
206 |
attcttacgatgtgctcctttctttctagtttccacgattacctctttatgaggaaatctttgagaaacnnnnnnngaagagacacactctaaccattca |
305 |
Q |
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| T |
9368620 |
cttcttacgatgtgctcctttctttttagtttccacgattacctctttatgaggaaatcattgagaaac-aaaaaagaagagacagactctaaccattca |
9368718 |
T |
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| Q |
306 |
ttattgtttgttttattttattggcaaaattatgattgtgatcttgtaagttaatcttttttatttcttggattggtccttcaatttcatttacctcgag |
405 |
Q |
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| T |
9368719 |
ttattgtttgttttattttattggcaaaattatgattgtgatcttgtaagttaatcttttttatttcttggattggtccttcaattttatttacctcgag |
9368818 |
T |
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| Q |
406 |
tcggtattttttacattgtatttgc |
430 |
Q |
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| T |
9368819 |
tcggtactttttacattgtatttgc |
9368843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 430
Target Start/End: Original strand, 9373401 - 9373480
Alignment:
| Q |
349 |
ttgtaagttaatcttttttatttcttggattggtccttcaatttcatttacctcgagtcggtattttttacattgtatttgc |
430 |
Q |
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| T |
9373401 |
ttgtaagttgatcttttttatttcttggattggtccttcaaatttattttcctcaagtcggta--ttttacattgtatttgc |
9373480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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