View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_15 (Length: 440)
Name: NF5413_low_15
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 21 - 431
Target Start/End: Complemental strand, 35114629 - 35114214
Alignment:
| Q |
21 |
gctgggacaagaggtttggcaaacattttgttagtgcatttcatccactttttctagaaatatataacgtttcactttggaactactcattggaatataa |
120 |
Q |
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| T |
35114629 |
gctgggacaagaggtttggcaaacattttgttagtgcttttcatccactttttctagaattatataacgtttcactttggaactactcattggaatataa |
35114530 |
T |
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| Q |
121 |
acaagttactctcaaaggaagaaacagtcatttcaggccattta----cccataacatttagttgtgtaaagatatccttttcaagtttgtcaattatta |
216 |
Q |
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| T |
35114529 |
acaagttactctcaaaggaagaaacagtcatttcaggccatttatttacccataacatttagttgtgtaaagatatccttttcaagtttgtcaattatta |
35114430 |
T |
|
| Q |
217 |
ctcctgcctaatgcttaaaacgtgaccacaagcaaatcatttttctgaaataacaatattaatacacaaagtaggaaaaccttccaatagtgcatactgc |
316 |
Q |
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| T |
35114429 |
ctcctgcctaatgcttaaaacgtgaccacaagcaaatcatttttctgaaataacaatattaatacacaaagtaggaaaaccttccaatagtgcatactgc |
35114330 |
T |
|
| Q |
317 |
atacatcagaaaacttacaatgttctttctctgagtaac-nnnnnnnngggtaaatggtgagaatagaaacattttagaattttttatttctaagtggtg |
415 |
Q |
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| T |
35114329 |
atacatcagaaaacttacaatgttctttctctgagtaacaaacaaaaagggtaaatggtgagaatagaaacattttagaattttttatttctaagtggtg |
35114230 |
T |
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| Q |
416 |
ttgttacattgatgat |
431 |
Q |
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| T |
35114229 |
ttgttacattgatgat |
35114214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 91 - 263
Target Start/End: Original strand, 47985928 - 47986114
Alignment:
| Q |
91 |
ttcactttggaactactcattggaatataaacaagttactctcaaaggaagaaacagtcatttcaggccatttacc--------------cataacattt |
176 |
Q |
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| T |
47985928 |
ttcactttggaactactcattggaatataaacaagttactctcagaggaagaaacagtgatttttggccaatttgcttgaatgctcagctcataacattt |
47986027 |
T |
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| Q |
177 |
agttgtgtaaagatatccttttcaagtttgtcaattattactcctgcctaatgcttaaaacgtgaccacaagcaaatcatttttctg |
263 |
Q |
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| T |
47986028 |
agctgtgtaaagatatccttttcaagtttctcaattattactcctgtctaatgcttaaaacctgaccacaaacaaatcatctttctg |
47986114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 274 - 431
Target Start/End: Original strand, 47986173 - 47986331
Alignment:
| Q |
274 |
attaatacacaaagtaggaaaaccttccaatagtgcatactg----catacatcagaaaacttacaatgttctttctctgagtaac-nnnnnnnngggta |
368 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
47986173 |
attaatacacaaagtaggaaaacctcccaatagtgcatactatgtacatacatcagaaaacttacaatgttctttctctgactaacaaaaaaaacgggta |
47986272 |
T |
|
| Q |
369 |
aatggtgagaatagaaacattttagaattttttatttctaagtggtgttgttacattgatgat |
431 |
Q |
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| T |
47986273 |
aatggtgagaatagaaacattttagaa-tttttat---taagtggtgttgttacattgatgat |
47986331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 47985881 - 47985935
Alignment:
| Q |
17 |
aattgctgggacaagaggtttggcaaacattttgttagtgcatttcatccacttt |
71 |
Q |
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||||| ||||| |||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
47985881 |
aattgttgggataagaggtttgacaaacattttgttagtgcatttcattcacttt |
47985935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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