View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5413_low_16 (Length: 437)

Name: NF5413_low_16
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5413_low_16
NF5413_low_16
[»] chr6 (7 HSPs)
chr6 (16-426)||(31040543-31040948)
chr6 (154-426)||(31066557-31066829)
chr6 (43-134)||(17154648-17154739)
chr6 (192-224)||(31025572-31025604)
chr6 (186-230)||(31030918-31030962)
chr6 (54-133)||(29730305-29730383)
chr6 (42-120)||(10887069-10887146)
[»] chr4 (2 HSPs)
chr4 (42-106)||(2096924-2096988)
chr4 (43-120)||(16667446-16667522)
[»] chr3 (2 HSPs)
chr3 (43-107)||(23320122-23320186)
chr3 (52-112)||(46922833-46922892)
[»] chr2 (8 HSPs)
chr2 (48-104)||(9450312-9450368)
chr2 (42-134)||(20566078-20566169)
chr2 (68-134)||(5853550-5853617)
chr2 (68-134)||(16493619-16493686)
chr2 (68-134)||(22704561-22704628)
chr2 (68-134)||(25948063-25948130)
chr2 (52-134)||(15411693-15411774)
chr2 (42-134)||(23932591-23932682)
[»] chr8 (2 HSPs)
chr8 (68-134)||(40226074-40226141)
chr8 (239-279)||(33534876-33534916)
[»] chr1 (1 HSPs)
chr1 (68-134)||(36490805-36490870)
[»] scaffold0305 (1 HSPs)
scaffold0305 (52-132)||(18067-18146)
[»] chr5 (1 HSPs)
chr5 (42-134)||(35469579-35469671)


Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 31040543 - 31040948
Alignment:
Q  16 gttaaaagtttcataattttgcaatagaactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaagttactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31040543 gttaaaagtttcataattttgcaatagaactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaagttactaa 31040642  T
Q  116 ttttaattcctttaacatgcacatgttagacaaaccttattgaaaaatagatcgaagggttttaatacatatttatttttatgaaaagttctaaattgag 215  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31040643 ttttaattcctttaacatgcacatgttagacaaatcttattgaaaaatagatcgaaaggttttaatacatatttatttttatgaaaagttctaaattgag 31040742  T
Q  216 aattaaaatgtgtacatctagtagatcaatttaattcactacaaaaaagtttttatacaaaatacaactattattcaccttatttatccatatactgtac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     |||    
T  31040743 aattaaaatgtgtacatctagtagatcaatttaattcactacaaaaaagtttttatacaaaatccaactattattcaccttatttatccata-----tac 31040837  T
Q  316 tatcgaaaataaataataattaatgtgatcaaatttaatgtctagcctagtgttgcacatatatatgagtgagccaatgattttcctgtatagtgtagca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31040838 tatcgaaaataaataataattaatgtgatcaaatttaatgtctagcctagtgttgcacatatatatgagtgagccaatgattttcctgtatagtgtagca 31040937  T
Q  416 ttcacaggttc 426  Q
    |||||||||||    
T  31040938 ttcacaggttc 31040948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 154 - 426
Target Start/End: Original strand, 31066557 - 31066829
Alignment:
Q  154 attgaaaaatagatcgaagggttttaatacatatttatttttatgaaaagttctaaattgagaattaaaatgtgt--acatctagtagatcaatttaatt 251  Q
    |||||| ||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||    
T  31066557 attgaacaattgattgaagggttttaatacatacttatttttatgaaaagt-ctaaattgagaattaaaatatgtttacatctagtagatcaatttaatt 31066655  T
Q  252 cactacaaaaaagtttttatacaaaatacaactattattcaccttatttatccatatactgtactatcgaaaat-aaataata-attaatgtgatcaaat 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||     ||||||||||| | ||| |||| ||||||||||||||||    
T  31066656 cactacaaaaaagtttttatacaaaatacaactattattcaccttattcatccata-----tactatcgaaagtaaaaaaatatattaatgtgatcaaat 31066750  T
Q  350 ttaatgtctagcctagtgttgcac--atatatatgagtgagccaatgattttcctgtatagtgtagcattcacaggttc 426  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  31066751 ttaatgtctagcctagtgttgcacaaatatatatgagtgagccaatgatttttctgtatagtgtagcattcacatgttc 31066829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 17154739 - 17154648
Alignment:
Q  43 aactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaagttactaattttaattcctttaacatg 134  Q
    |||| ||||||| |||||||| |  ||||||||| ||||| | | | |||||||||||||||||| ||| || |||||||| ||||||||||    
T  17154739 aacttgtgtattctatattaaatgtataattttttaataattgattattgtttttcaataaaaaaattaatacttttaatttctttaacatg 17154648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 31025572 - 31025604
Alignment:
Q  192 ttttatgaaaagttctaaattgagaattaaaat 224  Q
    |||||||||||||||||||||||||||||||||    
T  31025572 ttttatgaaaagttctaaattgagaattaaaat 31025604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 31030918 - 31030962
Alignment:
Q  186 atttatttttatgaaaagttctaaattgagaattaaaatgtgtac 230  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||    
T  31030918 atttacttttattaaaagttctaaattgagaattataatgtgtac 31030962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 29730383 - 29730305
Alignment:
Q  54 tttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaagttactaattttaattcctttaacat 133  Q
    |||||||||| || |||| |||| ||||||| | ||||||||||||||| |||| ||| ||||||||||  |||||||||    
T  29730383 tttatattaaatatataactttttaataaataactgttgtttttcaata-aaaacttattaattttaatagctttaacat 29730305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 10887146 - 10887069
Alignment:
Q  42 gaactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaagttactaatttta 120  Q
    ||||| |||||||||||||||| ||  ||  |||| ||||||| ||| |||||||||||||||||| |||||| |||||    
T  10887146 gaacttgtgtattttatattaaatatgtagctttttaataaataagttttgtttttcaataaaaaa-ttactactttta 10887069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 2096988 - 2096924
Alignment:
Q  42 gaactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaa 106  Q
    ||||| ||| |||||||||||| || |||| |||| ||||||| | |||||||||||||||||||    
T  2096988 gaacttgtgcattttatattaaatatataactttttaataaataattgttgtttttcaataaaaa 2096924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 16667446 - 16667522
Alignment:
Q  43 aactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaagttactaatttta 120  Q
    |||| |||||||||||||||| ||  ||  |||| ||||||| |||||||||||||||| ||||| |||||| |||||    
T  16667446 aacttgtgtattttatattaaatatgtagctttttaataaataagtgttgtttttcaatgaaaaa-ttactactttta 16667522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 23320186 - 23320122
Alignment:
Q  43 aactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaa 107  Q
    ||||||||||||||||||||| || |||  |||| ||||||| | || |||||||||||||||||    
T  23320186 aactcgtgtattttatattaaatatatatctttttaataaataattgatgtttttcaataaaaaa 23320122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 46922833 - 46922892
Alignment:
Q  52 attttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaagttac 112  Q
    ||||||||||||||||||||||||| |||||||   ||||| |||||||||||||| ||||    
T  46922833 attttatattaagtacataattttttaataaatagttgttg-ttttcaataaaaaaattac 46922892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 9450368 - 9450312
Alignment:
Q  48 gtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaa 104  Q
    ||||||||| |||||| || ||||||||| ||||||| | |||||||||||||||||    
T  9450368 gtgtattttctattaaatatataattttttaataaataattgttgtttttcaataaa 9450312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 20566078 - 20566169
Alignment:
Q  42 gaactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaagttactaattttaattcctttaacatg 134  Q
    ||||| ||||||||| |||||| || ||||| ||| ||||||| | |||||||||||||| ||| |||| ||| ||||| || ||||||||||    
T  20566078 gaacttgtgtattttttattaaatagataatattttaataaataattgttgtttttcaat-aaatagttgctatttttagttactttaacatg 20566169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 5853550 - 5853617
Alignment:
Q  68 ataatttttcaataaatcagtgttgtttttcaataaaaa-agttactaattttaattcctttaacatg 134  Q
    ||||||||| ||||||| | ||||||||||||||||||| | | |||| |||||||| ||||||||||    
T  5853550 ataatttttaaataaataattgttgtttttcaataaaaacactaactacttttaattgctttaacatg 5853617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 16493619 - 16493686
Alignment:
Q  68 ataatttttcaataaatcagtgttgtttttcaataaaaa-agttactaattttaattcctttaacatg 134  Q
    ||||||||| ||||||| | ||||||||||||||||||| | | |||| |||||||| ||||||||||    
T  16493619 ataatttttaaataaataattgttgtttttcaataaaaacattaactacttttaattgctttaacatg 16493686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 22704628 - 22704561
Alignment:
Q  68 ataatttttcaataaatcagtgttgtttttcaataaaaa-agttactaattttaattcctttaacatg 134  Q
    ||||||||| ||||||| | ||||||||||||||||||| | | |||| |||||||| ||||||||||    
T  22704628 ataatttttaaataaataattgttgtttttcaataaaaacactaactacttttaattgctttaacatg 22704561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 25948130 - 25948063
Alignment:
Q  68 ataatttttcaataaatcagtgttgtttttcaataaaaaag-ttactaattttaattcctttaacatg 134  Q
    ||||||||| ||||||| | ||||||||||||||||||| | | |||| |||||||| ||||||||||    
T  25948130 ataatttttaaataaataattgttgtttttcaataaaaacgctaactacttttaattgctttaacatg 25948063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 15411693 - 15411774
Alignment:
Q  52 attttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaagttactaattttaattcctttaacatg 134  Q
    |||||||||||| ||  ||  |||| ||||||| | |||||||||||||||||||| |||||| ||||| || ||||||||||    
T  15411693 attttatattaaatatgtagctttttaataaattattgttgtttttcaataaaaaa-ttactacttttagttactttaacatg 15411774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 23932682 - 23932591
Alignment:
Q  42 gaactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaagttactaattttaattcctttaacatg 134  Q
    ||||| ||| |||||||||||| || | || |||| ||||||| | |||| |||||||||  ||| ||||||| ||||| |||||||||||||    
T  23932682 gaacttgtgcattttatattaactataaaactttttaataaataattgttctttttcaatgtaaa-gttactatttttagttcctttaacatg 23932591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 40226074 - 40226141
Alignment:
Q  68 ataatttttcaataaatcagtgttgtttttcaataaaaa-agttactaattttaattcctttaacatg 134  Q
    ||||||||| ||||||| | ||||||||||||||||||| | | |||| |||||||| ||||||||||    
T  40226074 ataatttttaaataaataattgttgtttttcaataaaaacactaactacttttaattgctttaacatg 40226141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 33534876 - 33534916
Alignment:
Q  239 gatcaatttaattcactacaaaaaagtttttatacaaaata 279  Q
    |||||||||||||||||||||||| ||||| | ||||||||    
T  33534876 gatcaatttaattcactacaaaaatgttttcaaacaaaata 33534916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 36490870 - 36490805
Alignment:
Q  68 ataatttttcaataaatcagtgttgtttttcaataaaaaagttactaattttaattcctttaacatg 134  Q
    |||| |||| ||||||| | ||||||||||||||| |||| |||||| |||||||| ||||||||||    
T  36490870 ataactttttaataaataattgttgtttttcaata-aaaacttactacttttaattgctttaacatg 36490805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 18067 - 18146
Alignment:
Q  52 attttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaagttactaattttaattcctttaaca 132  Q
    |||||||||||| || |||| |||  ||||||| | |||||||||| ||| || | ||||||| |||||||||||||||||    
T  18067 attttatattaaatatataactttctaataaataattgttgttttttaattaaga-gttactacttttaattcctttaaca 18146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 35469671 - 35469579
Alignment:
Q  42 gaactcgtgtattttatattaagtacataatttttcaataaatcagtgttgtttttcaataaaaaagttactaattttaattcctttaacatg 134  Q
    ||||| || ||||||||||||| || |||| ||||   ||| | | |||||||||||||||||||| || ||| ||||| || ||||||||||    
T  35469671 gaactagtttattttatattaaatatataactttttcttaattgattgttgtttttcaataaaaaaattgctacttttagttactttaacatg 35469579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University