View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_17 (Length: 426)
Name: NF5413_low_17
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 135 - 415
Target Start/End: Original strand, 50368912 - 50369192
Alignment:
| Q |
135 |
tcctcatctggtgtcattgaatacatgcaagattgtttcaccaccggctcacttgaatcaacaaccccaccaaatatcccttcaacccattccttcaact |
234 |
Q |
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| T |
50368912 |
tcctcatctggtgtcattgaatacatgcaagattgtttcaccactggctcacttgaatcaacaaccccaccaaatatcccttcaacccattccttcaact |
50369011 |
T |
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| Q |
235 |
cattcatcatcacaactgagccccacggtctcttatccgggtcacacaaccgaccaccatggaccgcggctttaatcaaacccggatactccaaaacggg |
334 |
Q |
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| T |
50369012 |
cattcatcatcacaactgagccccacggtctcttatccgggtcacacaaccgaccaccatggaccgcggctttaatcaaacccggatactccaaaacggg |
50369111 |
T |
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| Q |
335 |
tgttccgtatacataaaccttaccaaagctagcaaaagttggaaaatcgccaccaattacgaatttaccttcatgcccttt |
415 |
Q |
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| T |
50369112 |
tgttccgtatacataagccttaccaaagctagcaaaagttggaaaatcaccaccaattacgaatttaccttcatgcccttt |
50369192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 135 - 392
Target Start/End: Original strand, 50379075 - 50379332
Alignment:
| Q |
135 |
tcctcatctggtgtcattgaatacatgcaagattgtttcaccaccggctcacttgaatcaacaaccccaccaaatatcccttcaacccattccttcaact |
234 |
Q |
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|||||||| || |||||||||||||| |||| |||||||| || ||||| ||||||||| | ||||| ||| ||||||||||||| ||||||| || |
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| T |
50379075 |
tcctcatccggagtcattgaatacatacaagcctgtttcacaacaggctcggatgaatcaaccaacccacagaatctcccttcaacccactccttcatct |
50379174 |
T |
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| Q |
235 |
cattcatcatcacaactgagccccacggtctcttatccgggtcacacaaccgaccaccatggaccgcggctttaatcaaacccggatactccaaaacggg |
334 |
Q |
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| T |
50379175 |
catccatcatcacacctgccccccacggtctcttatccgggtcacacaggttaccaccgtgaactgccaccttaatcaaacctggaaactcaaaacttgg |
50379274 |
T |
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| Q |
335 |
tgttccgtatacataaaccttaccaaagctagcaaaagttggaaaatcgccaccaatt |
392 |
Q |
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| T |
50379275 |
cgatccatacaataaaaccctacccaagctagcaaacgttggaaaatcaccaccaatt |
50379332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 50368778 - 50368835
Alignment:
| Q |
1 |
tagtttccccatccaccacaagttgagtcaatatcttaccaataaccggagccatctt |
58 |
Q |
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| T |
50368778 |
tagtttccccatccaccacaagttgagtcaatatcttaccaataactggagccatctt |
50368835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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