View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5413_low_19 (Length: 400)
Name: NF5413_low_19
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 712868 - 713240
Alignment:
| Q |
19 |
ggtacactatatgtcgggtttgttacttctaatccagaaaaccgtctcatcacaaaagtactgaacaaaggagatgtttttgtgtttccaattggtctca |
118 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
712868 |
ggtactctctatgtcgggtttgttacttctaatccagaaaaccgtctcattacaaaagtactgaacaaaggagatgtgtttgtgtttccaattggcctca |
712967 |
T |
|
| Q |
119 |
ttcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttgg |
218 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
712968 |
ttcactttcaattgaatgttgggtatggaaatgcagttgctattgctggacttagcagccaaaatcctggtgtaatcacaattgctaatgctgtatttgg |
713067 |
T |
|
| Q |
219 |
atctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaac |
318 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
713068 |
atctaatccaaaaatttcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggataatcttcaaaaacaattctgggtggacaacaac |
713167 |
T |
|
| Q |
319 |
tagaattgcaggctgtgatatgtgcttgaatcactaaatttattgttaaatttgttctttattttaccctatg |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
713168 |
tagaattgcaggctgtgatatgtgcttgaatcactaaatttattgttaaatttgttctttattttaccctatg |
713240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 710839 - 710512
Alignment:
| Q |
19 |
ggtacactatatgtcgggtttgttacttctaatccagaaaaccgtctcatcacaaaagtactgaacaaaggagatgtttttgtgtttccaattggtctca |
118 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
710839 |
ggtactctctatgtcgggtttgttacttctaatccagaaaaccgtctcatcacaaaagtactgaacaaaggagatgtgtttgtgtttccaattggtctca |
710740 |
T |
|
| Q |
119 |
ttcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttgg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
710739 |
ttcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatcctggtgtaatcacaattgctaatgctgtatttgg |
710640 |
T |
|
| Q |
219 |
atctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
710639 |
atctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaacaattttgggtggacaacaac |
710540 |
T |
|
| Q |
319 |
tagaattgcaggctgtgatatgtgcttg |
346 |
Q |
| |
|
|||||||||||| ||||||||| |||| |
|
|
| T |
710539 |
tagaattgcaggtcgtgatatgtacttg |
710512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 702570 - 702266
Alignment:
| Q |
19 |
ggtacactatatgtcgggtttgttacttctaatccagaaaaccgtctcatcacaaaagtactgaacaaaggagatgtttttgtgtttccaattggtctca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
702570 |
ggtacactatatgtcgggtttgttacttctaatccagaaaaccgtctcattacaaaagtactgaacaaaggagatgtgtttgtgtttccaattggtctca |
702471 |
T |
|
| Q |
119 |
ttcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
702470 |
ttcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttgg |
702371 |
T |
|
| Q |
219 |
atctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
702370 |
atctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaacaattctgggtggacaactac |
702271 |
T |
|
| Q |
319 |
tagaa |
323 |
Q |
| |
|
||||| |
|
|
| T |
702270 |
tagaa |
702266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 717872 - 717568
Alignment:
| Q |
19 |
ggtacactatatgtcgggtttgttacttctaatccagaaaaccgtctcatcacaaaagtactgaacaaaggagatgtttttgtgtttccaattggtctca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
717872 |
ggtacactatatgtcgggtttgttacttctaatccagaaaaccgtctcataacaaaagtactaaacaaaggagatgtgtttgtgtttccaattggtctca |
717773 |
T |
|
| Q |
119 |
ttcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttgg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
717772 |
ttcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatcctggtgtaatcacaattgctaatgctgtatttgg |
717673 |
T |
|
| Q |
219 |
atctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
717672 |
atctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaacaattctgggtggacaacaac |
717573 |
T |
|
| Q |
319 |
tagaa |
323 |
Q |
| |
|
||||| |
|
|
| T |
717572 |
tagaa |
717568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 29 - 325
Target Start/End: Original strand, 716736 - 717029
Alignment:
| Q |
29 |
atgtcgggtttgttacttctaatccagaaaaccgtctcatcacaaaagtactgaacaaaggagatgtttttgtgtttccaattggtctcattcacttcca |
128 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
716736 |
atgtcggttttgttacttctaacccagaaaaccgtctcattacaaaagttcttaacaaaggagatgtctttgtgtttccaattggtcttattcacttcca |
716835 |
T |
|
| Q |
129 |
attgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatcca |
228 |
Q |
| |
|
| ||| |||| |||||||||| |||| ||| ||||||||| |||||| ||| || | || ||||| ||| ||| | |||||||| ||||||| |
|
|
| T |
716836 |
acataatatgggggatggaaatgcggttgtcatttctggacttaacagccataattcaagagttatcactattattaaggaggtatttgggtctaatc-- |
716933 |
T |
|
| Q |
229 |
aaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaactagaatt |
325 |
Q |
| |
|
|||| ||||||||| |||||||||| ||| ||||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
716934 |
-aaatttcttcagaacttctcaccaaggctcttcaagtggacaataacatagttgacaatcttcagaaacaattctggttggacaacaattagaatt |
717029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 722673 - 722779
Alignment:
| Q |
82 |
aacaaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaa |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||||| ||||| ||| ||||| ||||||| |||| |
|
|
| T |
722673 |
aacaaaggagatgtttttgtgtttccaattggtctcattcacttcgagcataatacaggagatggaaatgcggttgcaatttctggatttagcagtcaaa |
722772 |
T |
|
| Q |
182 |
atccagg |
188 |
Q |
| |
|
||||||| |
|
|
| T |
722773 |
atccagg |
722779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 58 - 306
Target Start/End: Original strand, 35313595 - 35313843
Alignment:
| Q |
58 |
aaccgtctcatcacaaaagtactgaacaaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttg |
157 |
Q |
| |
|
||||||||| |||| |||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || || ||||| | || ||| |
|
|
| T |
35313595 |
aaccgtctcttcaccaaagtattgaacaaaggtgatgtatttgtgtttccaatcggtctcattcacttccaattgaacgttggttatggggaggctattg |
35313694 |
T |
|
| Q |
158 |
ctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagc |
257 |
Q |
| |
|
| |||||||| ||||| |||||||| || || || || || ||||| |||||||| ||||||||||| ||| ||| |||| ||||||||||||||||| |
|
|
| T |
35313695 |
ccattgctggtcttagtagccaaaaccctggagtgattaccattgcaaatgctgtgtttggatctaaaccaccaatttctttggaagttctcaccaaagc |
35313794 |
T |
|
| Q |
258 |
ttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgg |
306 |
Q |
| |
|
|||||||| || || ||| || | ||| |||||||||| ||||||||| |
|
|
| T |
35313795 |
ctttcaagtggataaaaatgtaatcgactatcttcaaaagcaattctgg |
35313843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 20353897 - 20354033
Alignment:
| Q |
61 |
cgtctcatcacaaaagtactgaacaaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgcta |
160 |
Q |
| |
|
|||||| |||| ||||| || ||||| || ||||| |||||||| ||||||||||| ||||| || ||| |||||||||||||||| || || ||||||| |
|
|
| T |
20353897 |
cgtctcttcaccaaagtgctcaacaagggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgctgttgcta |
20353996 |
T |
|
| Q |
161 |
ttgctggacttagcagccaaaatccaggtgtaatcac |
197 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
20353997 |
ttgctggacttagcagtcaaaatccaggagtaatcac |
20354033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 73 - 210
Target Start/End: Complemental strand, 20357946 - 20357809
Alignment:
| Q |
73 |
aaagtactgaacaaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggactta |
172 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| ||||||||||| ||||| || ||| |||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
20357946 |
aaagtgctcaacaagggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaatgccgttgctattgctggactta |
20357847 |
T |
|
| Q |
173 |
gcagccaaaatccaggtgtaatcacaattgctaatgct |
210 |
Q |
| |
|
|||| ||||||||||| || ||||| |||| |||||| |
|
|
| T |
20357846 |
gcagtcaaaatccaggagttatcaccgttgcaaatgct |
20357809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 5278570 - 5278442
Alignment:
| Q |
82 |
aacaaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaa |
181 |
Q |
| |
|
||||| || ||||| |||||||| ||||||||||| ||||| || ||| |||||||||||||||| || || ||||||||||||||||||||||| |||| |
|
|
| T |
5278570 |
aacaagggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaa |
5278471 |
T |
|
| Q |
182 |
atccaggtgtaatcacaattgctaatgct |
210 |
Q |
| |
|
||||||| || ||||| |||| |||||| |
|
|
| T |
5278470 |
atccaggagttatcactgttgcaaatgct |
5278442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 5286551 - 5286423
Alignment:
| Q |
82 |
aacaaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaa |
181 |
Q |
| |
|
||||| || ||||| |||||||| ||||||||||| ||||| || ||| |||||||||||||||| || || ||||||||||||||||||||||| |||| |
|
|
| T |
5286551 |
aacaagggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgccgttgctattgctggacttagcagtcaaa |
5286452 |
T |
|
| Q |
182 |
atccaggtgtaatcacaattgctaatgct |
210 |
Q |
| |
|
||||||| || ||||| |||| |||||| |
|
|
| T |
5286451 |
atccaggagttatcactgttgcaaatgct |
5286423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 5282505 - 5282641
Alignment:
| Q |
61 |
cgtctcatcacaaaagtactgaacaaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgcta |
160 |
Q |
| |
|
|||||| |||| ||||| || ||||| || ||||| |||||||| || |||||||| ||||| || || |||||||||||||||| || || ||||||| |
|
|
| T |
5282505 |
cgtctcttcaccaaagtgctcaacaagggtgatgtgtttgtgttcccgattggtcttattcattttcagctgaatgtgggatatggcaacgctgttgcta |
5282604 |
T |
|
| Q |
161 |
ttgctggacttagcagccaaaatccaggtgtaatcac |
197 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || ||||| |
|
|
| T |
5282605 |
ttgctggacttagcagtcaaaacccaggagttatcac |
5282641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 6235544 - 6235378
Alignment:
| Q |
61 |
cgtctcatcacaaaagtactgaacaaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgcta |
160 |
Q |
| |
|
|||||| |||| ||||| || ||||| || ||||| |||||||| ||||||||||| ||||| || ||| | |||||||||||||| || || ||||||| |
|
|
| T |
6235544 |
cgtctcttcaccaaagtgctaaacaagggtgatgtgtttgtgttcccaattggtcttattcattttcaactaaatgtgggatatggcaacgctgttgcta |
6235445 |
T |
|
| Q |
161 |
ttgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatcc |
227 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || ||||| |||| |||||| | ||| ||||||||| |
|
|
| T |
6235444 |
ttgctggacttagcagtcaaaacccaggagttatcaccgttgcaaatgctttgtttaaatctaatcc |
6235378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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