View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_21 (Length: 394)
Name: NF5413_low_21
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 35308063 - 35307687
Alignment:
| Q |
1 |
agaaaaagggagtcacaattgaggatttcaaccggtccataacaaaattattgatccatcaacgaatttggcacgtcttatggaacaatataacctttat |
100 |
Q |
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| T |
35308063 |
agaaaaagggagtcacaattgaggatttcaaccggttcataataaaattattgatccatcaacaaatttggcacgtcttatgaaacaatataacctttac |
35307964 |
T |
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| Q |
101 |
cattgaaaaatttaattctccaggtcaaaatggtatttggcatatgcacttgaggtctagaaaaagtctcagtggtattgattaaccgtcattatcaaca |
200 |
Q |
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| T |
35307963 |
cattgaaaaaattaattctccaggtcaaaatggtatttggcatatgcacttgaggtctagaaaaagtcttagtggtattgattaaccgtcattatcaaca |
35307864 |
T |
|
| Q |
201 |
actagaaggtcaggccaatatagaccaaatgaactttcgcaaatggtagcatcgccgacgtttgtggcttcacctaacgtttctaagtacaaccaattga |
300 |
Q |
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| T |
35307863 |
actagaaggtcatgccaatatagaccaaatgaactttcgcaaacggtagcattgccaacgtttgtggctccacctaacgtttctaagtacaaccaattga |
35307764 |
T |
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| Q |
301 |
tacacctgaaacttcagttataatgacaacgtctttcatttgtcatagaggtgcatacattgttaaactcgtgattc |
377 |
Q |
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| T |
35307763 |
tacacctgaaacttcagttataatgacaatgtctttcatttgtcatagaggtgcatacattgttaaactcgtgattc |
35307687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 9558759 - 9558681
Alignment:
| Q |
140 |
gcatatgcacttgaggtctagaaaaagtctcagtggtattgattaaccgtcattatcaacaactagaaggtcaggccaa |
218 |
Q |
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|||||||||| | |||| | ||||||||||||| |||| ||| |||| |||| || |||||||||||||||||||||| |
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| T |
9558759 |
gcatatgcacctaaggtatggaaaaagtctcagcagtatggatcaaccatcataattaacaactagaaggtcaggccaa |
9558681 |
T |
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