View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5413_low_23 (Length: 388)

Name: NF5413_low_23
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5413_low_23
NF5413_low_23
[»] chr7 (5 HSPs)
chr7 (20-376)||(2474466-2474803)
chr7 (323-354)||(45863680-45863711)
chr7 (323-376)||(5789195-5789249)
chr7 (323-379)||(5096550-5096607)
chr7 (323-355)||(25089111-25089143)
[»] chr1 (3 HSPs)
chr1 (308-376)||(42986567-42986636)
chr1 (323-379)||(8028721-8028778)
chr1 (323-355)||(43603003-43603035)
[»] chr3 (5 HSPs)
chr3 (323-376)||(18955803-18955856)
chr3 (319-376)||(17035199-17035257)
chr3 (323-376)||(37681318-37681372)
chr3 (323-379)||(3806637-3806694)
chr3 (323-379)||(44177050-44177107)
[»] scaffold0003 (1 HSPs)
scaffold0003 (322-381)||(226434-226493)
[»] chr8 (6 HSPs)
chr8 (336-381)||(4205196-4205242)
chr8 (323-379)||(415148-415205)
chr8 (323-379)||(1657879-1657936)
chr8 (323-379)||(14031796-14031853)
chr8 (323-379)||(36801846-36801903)
chr8 (323-379)||(37402240-37402297)
[»] chr6 (2 HSPs)
chr6 (323-365)||(1190930-1190972)
chr6 (323-376)||(12185300-12185354)
[»] chr4 (2 HSPs)
chr4 (323-376)||(10981668-10981722)
chr4 (323-379)||(23315876-23315933)
[»] scaffold0035 (1 HSPs)
scaffold0035 (323-379)||(81796-81853)
[»] chr5 (3 HSPs)
chr5 (323-379)||(27263868-27263925)
chr5 (323-379)||(28394696-28394753)
chr5 (323-379)||(41879835-41879892)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 2474466 - 2474803
Alignment:
Q  20 caatgcccggtctatgatgcaatcaacaattactcaatgattgaacatattt-agtttggtgtgtgtggggattttctttgatgatgtagcaggaaaatg 118  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2474466 caatgcccggtctatgatgcaatcaaca-ttactcaatgattgaacatattttagtttggtgtgtgtggggattttctttgatgatgtagcaggaaaatg 2474564  T
Q  119 ttgaaaggagtgaaaataggtggacaagtgttggcttgatgaccaataaccttgaagaaaataagatatagatgatcgaacatttatgattgccctagtg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2474565 ttgaaaggagtgaaaataggtggacaagtgttggcttgatgaccaataaccttgaagaaaataagatatagacgatcgaacatttatgattgccctagtg 2474664  T
Q  219 tttcaattgattggttgtttaataattgatatcatctataccatggagtataatactatatataaagaaaatatggggnnnnnnngaaagattttagact 318  Q
    |||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||         |||||||| ||||    
T  2474665 tttcaattgattggttgtttaataattgatatcatctatac-----------------tatataaagaaaatatggggtttttag--aagattttggact 2474745  T
Q  319 gtcctttttattatttcaattatactcttaaacaaatgttcttatataatgttatatt 376  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  2474746 gtcctttttattatttcaattatacttttaaataaatgttcttatataatgttatatt 2474803  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 354
Target Start/End: Complemental strand, 45863711 - 45863680
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaa 354  Q
    ||||||||||||||||||||||||||||||||    
T  45863711 tttttattatttcaattatactcttaaacaaa 45863680  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 5789195 - 5789249
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatatt 376  Q
    ||||||| ||||||||||||| | ||||||||| |||||||| ||||||||||||    
T  5789195 tttttatgatttcaattatacccataaacaaattttcttatattaatgttatatt 5789249  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 5096607 - 5096550
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  5096607 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 5096550  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 355
Target Start/End: Original strand, 25089111 - 25089143
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaat 355  Q
    ||||||||||||||||||||| |||||||||||    
T  25089111 tttttattatttcaattatacccttaaacaaat 25089143  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 376
Target Start/End: Original strand, 42986567 - 42986636
Alignment:
Q  308 gattttagactgtcctttttattatttcaattatactcttaaacaaatgttcttat-ataatgttatatt 376  Q
    |||||| ||||| | ||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  42986567 gattttggactgacttttttgttatttcaattatacccttaaacaaatgttcttataataattttatatt 42986636  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 8028778 - 8028721
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  8028778 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 8028721  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 355
Target Start/End: Original strand, 43603003 - 43603035
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaat 355  Q
    ||||||||||||||||||||| |||||||||||    
T  43603003 tttttattatttcaattatacccttaaacaaat 43603035  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 18955803 - 18955856
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttatataatgttatatt 376  Q
    ||||| |||||  |||||||| ||||||||||| ||||||||||||||||||||    
T  18955803 tttttgttattctaattatacccttaaacaaatattcttatataatgttatatt 18955856  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 17035199 - 17035257
Alignment:
Q  319 gtcctttttattatttcaattatactcttaaacaaatgttcttat-ataatgttatatt 376  Q
    ||||||||| ||||||||||||||| ||||||||||| ||| ||| ||||| |||||||    
T  17035199 gtcctttttgttatttcaattatacccttaaacaaatcttcatatgataatattatatt 17035257  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 37681318 - 37681372
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatatt 376  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| ||||||||||||    
T  37681318 tttttataatttcaattatacccttaaacaaattttcctatattaatgttatatt 37681372  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 3806637 - 3806694
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  3806637 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 3806694  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 44177107 - 44177050
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  44177107 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 44177050  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 381
Target Start/End: Complemental strand, 226493 - 226434
Alignment:
Q  322 ctttttattatttcaattatactcttaaacaaatgttcttatataatgttatattcttcg 381  Q
    |||||| |||||  ||||||||  |||||||||| |||||||||||||||||||| ||||    
T  226493 ctttttgttattctaattatacgattaaacaaattttcttatataatgttatattgttcg 226434  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 4205242 - 4205196
Alignment:
Q  336 aattatactcttaaacaaatgttcttata-taatgttatattcttcg 381  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||||    
T  4205242 aattatactcttaaacaaattttcttatattaatgttatattgttcg 4205196  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 415148 - 415205
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  415148 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 415205  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 1657879 - 1657936
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  1657879 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 1657936  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 14031853 - 14031796
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  14031853 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 14031796  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 36801846 - 36801903
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  36801846 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 36801903  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 37402297 - 37402240
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  37402297 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 37402240  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 1190972 - 1190930
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttatat 365  Q
    ||||||||||||||||||||| ||||||||||  |||||||||    
T  1190972 tttttattatttcaattatacccttaaacaaactttcttatat 1190930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 12185300 - 12185354
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatatt 376  Q
    ||||||| ||| |||||||| |||||||||||| |||||||| ||||||||||||    
T  12185300 tttttataattccaattatattcttaaacaaattttcttatattaatgttatatt 12185354  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 10981722 - 10981668
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttat-ataatgttatatt 376  Q
    ||||| ||||| ||||||||| ||||||||||| ||||||| |||||||||||||    
T  10981722 tttttgttattccaattatacccttaaacaaattttcttataataatgttatatt 10981668  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 23315876 - 23315933
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  23315876 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 23315933  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 81796 - 81853
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  81796 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 81853  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 27263925 - 27263868
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  27263925 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 27263868  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 28394753 - 28394696
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  28394753 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 28394696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 41879892 - 41879835
Alignment:
Q  323 tttttattatttcaattatactcttaaacaaatgttcttata-taatgttatattctt 379  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| |||||||| ||||||    
T  41879892 tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 41879835  T

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