View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5413_low_24 (Length: 386)
Name: NF5413_low_24
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 42298850 - 42299222
Alignment:
| Q |
1 |
caacgacacattatgtgttgcttgatgtaatttagttaatcaatcagcagtatgttgctttttcnnnnnnnnnnnncaaatatatgttagttagttgttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42298850 |
caacgacacattatgtgttgcttgatgtaatttagttaatcaattagcagtatgttgctttttcaaaaaatagaaacaaatatatgttagttagttgttg |
42298949 |
T |
|
| Q |
101 |
ttgatacttcagaagttcaaagatttaagtaaattatattcatctctatattctaatatttacaaacacaataaaatacaaattatcaaagaagatgagt |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42298950 |
ttgatatttcagaagttcaaagatttaagtaaattatattcatctctatattctaatatttacgaacacaataaaatacaaattatcaaagaagatgagt |
42299049 |
T |
|
| Q |
201 |
tgataaaaagcgagctcattgataatcataagaattagttgttccaattgaaagtccacgtgataaacctttttggttatatgcaagattaaaggtgcag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42299050 |
tgataaaaagcgagctcattgataatcataagaattagttgttccaattgaaagtccacattttaaacctttttggttatatgcaagattaaaggtgcag |
42299149 |
T |
|
| Q |
301 |
gagaaactaaagttaacattgagatgttggatcctattataagttaaggtgtaagagaaaatttcaattacctttg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42299150 |
gagaaactaaagttaacattgagatgttagatcc---tataagttaaggtgtaagaggaaatttcaattacctttg |
42299222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University