View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_28 (Length: 331)
Name: NF5413_low_28
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 44603556 - 44603862
Alignment:
| Q |
13 |
aatatcaggactagattcccattttcccttttctctagtctcccaatatccaccaacataacgataactattactcccttcttctttggcaaaccacctt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44603556 |
aatatcaggactagattcccattttcccttttctctagtctcccaatatccaccaacataacgataactattactcccttcttctttggcaaaccacctt |
44603655 |
T |
|
| Q |
113 |
ggtttccaacctttctcttgcatctttcgtgcctgcaaattattgtatcatacttttattaatggatgtggacatattaaccaacatcatg----aattt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44603656 |
ggtttccaacctttctcttgcatctttcgtgcctgcaaattattgtatcatacttttattaatggatgtggacatattaaccaacatcatgaattaattt |
44603755 |
T |
|
| Q |
209 |
tcaaatgtaaggattgtatatatgtacacctgtcgttgtctttgttccaaccgcaatttctcagaatttgccatttcatattctccattctccaaacatc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44603756 |
tcaaatgtaaggattgtatatatgtacacctgtcgttgtctttgttccaaccgcaatttctcagaatttgccatttcatattctccattctccaaacatc |
44603855 |
T |
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| Q |
309 |
tttgatc |
315 |
Q |
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||||||| |
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| T |
44603856 |
tttgatc |
44603862 |
T |
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