View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_29 (Length: 331)
Name: NF5413_low_29
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 4 - 313
Target Start/End: Complemental strand, 40403308 - 40402999
Alignment:
| Q |
4 |
tttataatgatcgactaatgttgagagtttgatggcagagtatgcatacacattgaaagtcgacgaaaaaagcgacgtctacagcttcggtgtggtactt |
103 |
Q |
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| T |
40403308 |
tttatgatgatcgactaatgttgagagtttaattgcagagtatgcatacacattgaaagtcgacgaaaaaagcgacgtctacagcttcggtgtggtactt |
40403209 |
T |
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| Q |
104 |
ctagagcttgtagcaggaagaaaacctgttggagaatttggtgatggagtagacattgtgcaatgggtgagaaaaatgacagattcaaacaaagaaggtg |
203 |
Q |
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| T |
40403208 |
ctagagcttgtagcaggaagaaaaccagttggagaatttggtgatggagtagacattgtgcaatgggtgagaaaaatgacagattcaaacaaagaaggtg |
40403109 |
T |
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| Q |
204 |
ttctaaaagttcttgatcctagacttccttcagttccacttcatgaggtgatgcatgtcttctatgtagccatgttatgtgtcgaagaacaagctgtaga |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40403108 |
ttctaaaagttcttgatcctagacttccttcagttccacttaatgaggtgatgcatgtcttctatgtagccatgttatgtgtcgaagaacaagctgtaga |
40403009 |
T |
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| Q |
304 |
aagaccaact |
313 |
Q |
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|||||||||| |
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| T |
40403008 |
aagaccaact |
40402999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 31 - 313
Target Start/End: Original strand, 4979774 - 4980056
Alignment:
| Q |
31 |
tttgatggcagagtatgcatacacattgaaagtcgacgaaaaaagcgacgtctacagcttcggtgtggtacttctagagcttgtagcaggaagaaaacct |
130 |
Q |
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| T |
4979774 |
tttgattgcagagtatgcctatacattgaaagttgatgagaaaagcgatgtatacagcttcggtgttgttcttttagagcttgtaactggaaggaaacca |
4979873 |
T |
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| Q |
131 |
gttggagaatttggtgatggagtagacattgtgcaatgggtgagaaaaatgacagattcaaacaaagaaggtgttctaaaagttcttgatcctagacttc |
230 |
Q |
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| T |
4979874 |
gttggagaatttggcgacggggtggacattgtgcaatgggtcagaaaaatgacagattccaacaaggaaggagttctaaaagttcttgatccaagacttt |
4979973 |
T |
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| Q |
231 |
cttcagttccacttcatgaggtgatgcatgtcttctatgtagccatgttatgtgtcgaagaacaagctgtagaaagaccaact |
313 |
Q |
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| T |
4979974 |
cctcagttcctctccaggaggtcatgcatgttttctatgtagccattctgtgtgttgaagaacaagcagtagaaaggccaact |
4980056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 39225199 - 39225091
Alignment:
| Q |
39 |
cagagtatgcatacacattgaaagtcgacgaaaaaagcgacgtctacagcttcggtgtggtacttctagagcttgtagcaggaagaaaacctgttggaga |
138 |
Q |
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|||| |||||||||||||||||||| || || ||||| || || |||||||| || ||||| || ||||| ||| || |||| |||| || || ||||| |
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| T |
39225199 |
cagaatatgcatacacattgaaagtggatgagaaaagtgatgtatacagctttggggtggtgctactagaacttttaacagggagaaggccagtgggaga |
39225100 |
T |
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| Q |
139 |
atttggtga |
147 |
Q |
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| T |
39225099 |
ttttggtga |
39225091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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