View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_31 (Length: 328)
Name: NF5413_low_31
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 29506510 - 29506208
Alignment:
| Q |
19 |
atgagaactcatggaagacattaatcgaccgagactggctgcatgttctcagcttctgtccgaaggtcttggaacaagacagatgacaggtatcgctccc |
118 |
Q |
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| T |
29506510 |
atgagaactcatggaagacattaatcgaccgagactggctgcatgttctcagcttctgtccgaaggtcttggaacaagacagatgacaggtatcgctccc |
29506411 |
T |
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| Q |
119 |
cgaaacttggatgaacagtctgaaattcaagtcatcacattagcaacaaaaatagagaactttgatgcctaaaatcacagtgcgaagcatatttttattt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29506410 |
cgaaacttggatgaacagtctgaaattcaagtcatcacattagcaacaaaaatagagaaatttgatgcctaaaatcacagtgcgaagcatatttttattt |
29506311 |
T |
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| Q |
219 |
acagcatctcaaattcaattacgataaaaaagacagaagtgtcatttgcttgcatattttaaggaaatttgttcttaccacaataagtttgcctttcttc |
318 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
29506310 |
acagcgtctcaaattcaattacgataaaaaagacagaagtgtcatttgcttgcatattttaaggaaaattgttcttaccacaataagtttgcctttgttc |
29506211 |
T |
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| Q |
319 |
tca |
321 |
Q |
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||| |
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| T |
29506210 |
tca |
29506208 |
T |
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