View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_39 (Length: 289)
Name: NF5413_low_39
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 16794562 - 16794426
Alignment:
| Q |
12 |
agagaaaggagatattaccattgtcgattcatcaggtgatagggttgattattatattagatcttccatgaaaaatgcatttgacaaggtttgtatttaa |
111 |
Q |
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| T |
16794562 |
agagaaaggagatattaccattgtcgattcatcaggtgatagggttgattattatattagatcttccatgaaaaatgcatttgacaaggtttgtatttaa |
16794463 |
T |
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| Q |
112 |
cctatatttttattttgcttcctctattagtattctt |
148 |
Q |
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| T |
16794462 |
cctatatttttattttccttcctctattagtattctt |
16794426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 16794378 - 16794304
Alignment:
| Q |
196 |
cgtctctaattctatcgtgcttattgatagaattagagacacatttcatatttttcctctttaagtttctatcac |
270 |
Q |
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| T |
16794378 |
cgtctccaattctatcgtgcttattgatagaattagagacacatttcatatttttcctcttgaagtttctatcac |
16794304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 32733794 - 32733876
Alignment:
| Q |
13 |
gagaaaggagatattaccattgtcgattcatcaggtgatagggttgattattatattagatcttccatgaaaaatgcatttga |
95 |
Q |
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| T |
32733794 |
gagagaggagactttaccattgtggattcgtctggtgatcgcgttgataactatattcgttcatccatgaaaaatgcatttga |
32733876 |
T |
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