View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_40 (Length: 284)
Name: NF5413_low_40
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 19856925 - 19857198
Alignment:
| Q |
1 |
caagctcaaaaccatcaccatcaaagaaatcataacattttccaaacacagtcatcatcacattattaagtgaaccaaaatgaagaacttttttcacctc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856925 |
caagctcaacaccatcaccatcaaagaaatcataacattttccaaacacagtcatcatcacattattaagtgaaccaaaatgaagaacttttttcacctc |
19857024 |
T |
|
| Q |
101 |
aacactacccatatcacccatcaaaaacttaatcctctcaaccattttcaaaccaacctcactcctaaaaccttcaaacccattaatcctcctaggacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19857025 |
aacactacccatatcacccatcaaaaacttaatcctctccaccattttcaaaccaacctcactcctaaaaccttcaaacccattaatcctcctaggacaa |
19857124 |
T |
|
| Q |
201 |
aacaaatgggttgaagaaatcctcctcaaattcctccagtactctccatatggagcaaaccccattgccctatg |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19857125 |
aacaaatgggttgaagaaatcctcctcaaattcctccagtactctccatacggagcaaaccccattgccctatg |
19857198 |
T |
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