View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_41 (Length: 283)
Name: NF5413_low_41
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 26597783 - 26597528
Alignment:
| Q |
19 |
atcatgaatcactaataaacttgaataagacacatgtaattacattgatgtaattttataaaccaaatatgggtggttaatcttcttctacccttcgaat |
118 |
Q |
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| T |
26597783 |
atcatgaatcactaataaacttgaataagacacatgtaattacattgatataattttataaaccaaatatgggtagttaatcttcttctacccttcgaat |
26597684 |
T |
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| Q |
119 |
tctctgttcttgccaataaaagcctctacagtacaacggaactcctcgttgctcatcttatcctcgggatacaaaatcctcacaatcatttcctcctcaa |
218 |
Q |
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||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
26597683 |
cctctgttcttggcaataaaagcctctacagtacgatggaactcctcgttgctcatcttatcctcgggatacaaaatcctcacaatcgtttcctccttaa |
26597584 |
T |
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| Q |
219 |
caacatgagcaggttcaatgtttttccttccattgttctcactctcacacctttgc |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26597583 |
caacatgagcaggttcaatgtttttccttccattgttctcactctcacacctttgc |
26597528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 274
Target Start/End: Complemental strand, 26613020 - 26612878
Alignment:
| Q |
132 |
caataaaagcctctacagtacaacggaactcctcgttgctcatcttatcctcgggatacaaaatcctcacaatcatttcctcctcaacaacatgagcagg |
231 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||||| |||||| ||||| |||| ||||| || | ||||| | || || |||||| |
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| T |
26613020 |
caataaaagcctctacagtacgacgaaactcctcgttgctcatctcatcctccggatatgaaattctcaccattttctcctcactagcagcaggagcagc |
26612921 |
T |
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| Q |
232 |
ttcaatgtttttccttccattgttctcactctcacacctttgc |
274 |
Q |
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| T |
26612920 |
ttcaatctttttccttccgctgttctcactctcacatctttgc |
26612878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 272
Target Start/End: Complemental strand, 26605467 - 26605333
Alignment:
| Q |
132 |
caataaaagcctctacagtacaacggaactcctcgttgctcatcttatcctcgggatacaaaatcctcacaatcatttcctcctcaacaacatgagcagg |
231 |
Q |
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|||||||||| |||||| | | ||| ||||| ||||||||||| | |||||| |||||| |||||||| | ||||||||||||| || | ||||| |
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| T |
26605467 |
caataaaagcttctacaatgcgacgaaactcatcgttgctcatttcatcctccggatacgaaatcctc---aacatttcctcctcagcaggagtagcagc |
26605371 |
T |
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| Q |
232 |
ttcaatgtttttccttccattgttctcactctcacaccttt |
272 |
Q |
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||||||| |||||||| || ||||||||||||||||||| |
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| T |
26605370 |
ttcaatgattttcctttca---ttctcactctcacaccttt |
26605333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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