View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5413_low_48 (Length: 262)

Name: NF5413_low_48
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5413_low_48
NF5413_low_48
[»] chr1 (7 HSPs)
chr1 (12-249)||(33693087-33693319)
chr1 (13-60)||(4347028-4347075)
chr1 (22-60)||(13344836-13344874)
chr1 (18-60)||(25061285-25061327)
chr1 (18-60)||(29759710-29759752)
chr1 (19-60)||(40352451-40352492)
chr1 (23-59)||(7335905-7335941)
[»] chr2 (7 HSPs)
chr2 (12-56)||(15220817-15220861)
chr2 (13-60)||(23359952-23359999)
chr2 (12-58)||(3853938-3853984)
chr2 (18-60)||(12110918-12110960)
chr2 (12-49)||(4894120-4894157)
chr2 (12-41)||(4908875-4908904)
chr2 (20-57)||(10918649-10918686)
[»] scaffold0009 (1 HSPs)
scaffold0009 (13-60)||(199393-199440)
[»] chr8 (4 HSPs)
chr8 (13-60)||(19649224-19649271)
chr8 (12-57)||(10368050-10368095)
chr8 (12-57)||(32767474-32767519)
chr8 (15-56)||(38875211-38875252)
[»] chr7 (9 HSPs)
chr7 (13-60)||(15311227-15311274)
chr7 (22-60)||(20088929-20088967)
chr7 (12-50)||(40561720-40561758)
chr7 (13-50)||(29829331-29829368)
chr7 (12-57)||(40491663-40491708)
chr7 (12-57)||(45557450-45557495)
chr7 (12-50)||(33853446-33853484)
chr7 (15-60)||(38230121-38230166)
chr7 (18-58)||(4228603-4228643)
[»] chr5 (4 HSPs)
chr5 (13-60)||(22811070-22811117)
chr5 (12-50)||(4306597-4306635)
chr5 (20-60)||(19784864-19784904)
chr5 (18-58)||(43152386-43152426)
[»] chr4 (13 HSPs)
chr4 (13-60)||(28947773-28947820)
chr4 (13-60)||(22699757-22699804)
chr4 (13-60)||(22980726-22980773)
chr4 (13-60)||(22994313-22994360)
chr4 (19-58)||(36150625-36150664)
chr4 (13-60)||(46958038-46958085)
chr4 (64-107)||(50945385-50945428)
chr4 (12-50)||(36639880-36639918)
chr4 (12-41)||(8604593-8604622)
chr4 (12-57)||(22250311-22250356)
chr4 (12-57)||(33843796-33843841)
chr4 (15-56)||(54487248-54487289)
chr4 (19-55)||(17898085-17898121)
[»] chr3 (11 HSPs)
chr3 (13-60)||(7012670-7012717)
chr3 (12-103)||(37334948-37335034)
chr3 (13-57)||(1441362-1441406)
chr3 (19-59)||(42644298-42644338)
chr3 (22-60)||(10852737-10852775)
chr3 (22-60)||(23918881-23918919)
chr3 (12-50)||(41591315-41591353)
chr3 (12-50)||(41596111-41596149)
chr3 (18-59)||(44225600-44225641)
chr3 (17-57)||(31766202-31766242)
chr3 (15-59)||(48089643-48089687)
[»] scaffold0361 (1 HSPs)
scaffold0361 (12-50)||(14076-14114)
[»] chr6 (3 HSPs)
chr6 (12-59)||(882771-882818)
chr6 (15-50)||(34620974-34621009)
chr6 (15-50)||(34748411-34748446)
[»] scaffold0172 (1 HSPs)
scaffold0172 (18-60)||(15281-15323)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 33693087 - 33693319
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactcgcttttaaccggaccggaaacaattttatagaatcaattcacttaaaatcaaacacatgct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||    
T  33693087 atgaatgtatccaaacataaatcactttacgttcaactcgcttttaaccg-----gaaacaattttatagaatcaattcacttaaaatcaaacacatgct 33693181  T
Q  112 aaatatcaagttttatccaatggcaatttaccacaacattcatgtttcttacaaattaccaaccatttaatttcaatcataatagtcagcataatttgct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33693182 aaatatcaagttttatccaatggcaatttaccacaacattcatgtttcttacaaattaccaaccatttaatttcaatcataatagtcagcataatttgct 33693281  T
Q  212 aataagctaattaccggaatcgaaaacaataacaaaac 249  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33693282 aataagctaattaccggaatcgaaaacaataacaaaac 33693319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 4347028 - 4347075
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||||    
T  4347028 tgaaggtatccaaacataaatcactttacattcaactcacttttaacc 4347075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 13344836 - 13344874
Alignment:
Q  22 ccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  13344836 ccaaacataaatcactttacgttcaactcacttttaacc 13344874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 25061285 - 25061327
Alignment:
Q  18 gtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||||||||||||||||| |||| ||||||||| |||||||||    
T  25061285 gtatccaaacataaatcaatttatgttcaactcacttttaacc 25061327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 29759710 - 29759752
Alignment:
Q  18 gtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||||||||||||||||| ||||| |||||||| |||||||||    
T  29759710 gtatccaaacataaatcattttacattcaactcacttttaacc 29759752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 40352451 - 40352492
Alignment:
Q  19 tatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    ||||||||||||||||||||||| || ||||| |||||||||    
T  40352451 tatccaaacataaatcactttacattaaactcacttttaacc 40352492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 7335941 - 7335905
Alignment:
Q  23 caaacataaatcactttacgttcaactcgcttttaac 59  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  7335941 caaacataaatcactttacattcaactcacttttaac 7335905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 15220861 - 15220817
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactcgctttt 56  Q
    |||||||||||||||||||||||||||||| |||||||| |||||    
T  15220861 atgaatgtatccaaacataaatcactttacattcaactcactttt 15220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 23359999 - 23359952
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||||    
T  23359999 tgaaggtatccaaacataaatcactttacattcaactcacttttaacc 23359952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 3853938 - 3853984
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactcgcttttaa 58  Q
    |||||||||||||||||||||||| ||||| |||||||| |||||||    
T  3853938 atgaatgtatccaaacataaatcaatttacattcaactcacttttaa 3853984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 12110918 - 12110960
Alignment:
Q  18 gtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||||||||||||||||||||||  |||||||| |||||||||    
T  12110918 gtatccaaacataaatcactttatattcaactcacttttaacc 12110960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 4894157 - 4894120
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaact 49  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  4894157 atgaatgtatctaaacataaatcactttaccttcaact 4894120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 4908875 - 4908904
Alignment:
Q  12 atgaatgtatccaaacataaatcactttac 41  Q
    ||||||||||||||||||||||||||||||    
T  4908875 atgaatgtatccaaacataaatcactttac 4908904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 10918649 - 10918686
Alignment:
Q  20 atccaaacataaatcactttacgttcaactcgctttta 57  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  10918649 atccaaacataaatcactttacattcaactcactttta 10918686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 199440 - 199393
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||    
T  199440 tgaaggtaaccaaacataaatcactttacgttcaactcacttttaacc 199393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 19649224 - 19649271
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||||    
T  19649224 tgaaggtatccaaacataaatcactttacattcaactcacttttaacc 19649271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 10368050 - 10368095
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactcgctttta 57  Q
    ||||||||||| ||||| |||||||||||| |||||||| ||||||    
T  10368050 atgaatgtatctaaacacaaatcactttaccttcaactcactttta 10368095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 32767474 - 32767519
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactcgctttta 57  Q
    |||||||||||||||||||||||| ||||| | |||||| ||||||    
T  32767474 atgaatgtatccaaacataaatcaatttacatccaactcactttta 32767519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 38875252 - 38875211
Alignment:
Q  15 aatgtatccaaacataaatcactttacgttcaactcgctttt 56  Q
    ||||||||||||||||||||||||||| || ||||| |||||    
T  38875252 aatgtatccaaacataaatcactttacattgaactcactttt 38875211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 15311274 - 15311227
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||    
T  15311274 tgaatgtatccaaacataaatcactatacattcaactcacttttaacc 15311227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 20088929 - 20088967
Alignment:
Q  22 ccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  20088929 ccaaacataaatcactttacgttcaactcacttttaacc 20088967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 40561758 - 40561720
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactc 50  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  40561758 atgaatgtatccaaacataaatcactttactttcaactc 40561720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 29829368 - 29829331
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactc 50  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  29829368 tgaatgtatccaaacataaatcactttacattcaactc 29829331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 40491663 - 40491708
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactcgctttta 57  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||    
T  40491663 atgaatgtatccaaaaataaatcactttaccttcaactcactttta 40491708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 45557450 - 45557495
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactcgctttta 57  Q
    ||||||||||||||||| |||||||||||| |||||||| ||||||    
T  45557450 atgaatgtatccaaacacaaatcactttaccttcaactcactttta 45557495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 33853484 - 33853446
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactc 50  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  33853484 atgaatgtatccaaacataaatcactttagcttcaactc 33853446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 38230121 - 38230166
Alignment:
Q  15 aatgtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    ||||||||||||||||||||| || || |||||||| |||||||||    
T  38230121 aatgtatccaaacataaatcaattcacattcaactcacttttaacc 38230166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 4228603 - 4228643
Alignment:
Q  18 gtatccaaacataaatcactttacgttcaactcgcttttaa 58  Q
    |||||||||||||||||||||| | |||||||| |||||||    
T  4228603 gtatccaaacataaatcacttttcattcaactcacttttaa 4228643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 22811070 - 22811117
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||||    
T  22811070 tgaaggtatccaaacataaatcactttacattcaactcacttttaacc 22811117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 4306597 - 4306635
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactc 50  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  4306597 atgaatgtatccaaacataaatcattttacattcaactc 4306635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 19784864 - 19784904
Alignment:
Q  20 atccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    ||||||||||||| |||||||| |||||||| |||||||||    
T  19784864 atccaaacataaaccactttacattcaactcacttttaacc 19784904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 43152426 - 43152386
Alignment:
Q  18 gtatccaaacataaatcactttacgttcaactcgcttttaa 58  Q
    |||||||||||||||||||||| | |||||||| |||||||    
T  43152426 gtatccaaacataaatcacttttcattcaactcacttttaa 43152386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 28947820 - 28947773
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||    
T  28947820 tgaaggtaaccaaacataaatcactttacgttcaactcacttttaacc 28947773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 22699757 - 22699804
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||| |||||||||||||||||||||||| |||||||  |||||||||    
T  22699757 tgaaggtatccaaacataaatcactttacattcaacttacttttaacc 22699804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 22980773 - 22980726
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||| |||||||||||||||||||||||| |||||||  |||||||||    
T  22980773 tgaaggtatccaaacataaatcactttacattcaacttacttttaacc 22980726  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 22994360 - 22994313
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||| |||||||||||||||||||||||| |||||||  |||||||||    
T  22994360 tgaaggtatccaaacataaatcactttacattcaacttacttttaacc 22994313  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 36150625 - 36150664
Alignment:
Q  19 tatccaaacataaatcactttacgttcaactcgcttttaa 58  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  36150625 tatccaaacataaatcactttacattcaactcacttttaa 36150664  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 46958038 - 46958085
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||| ||| |||||||||||| |||||||||||||||| |||||||||    
T  46958038 tgaaggtaaccaaacataaattactttacgttcaactcacttttaacc 46958085  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 50945428 - 50945385
Alignment:
Q  64 ccggaaacaattttatagaatcaattcacttaaaatcaaacaca 107  Q
    |||||| |||||||||| |||||||||||| |||||||||||||    
T  50945428 ccggaatcaattttataaaatcaattcactcaaaatcaaacaca 50945385  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 36639880 - 36639918
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactc 50  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  36639880 atgaatgtatccaaacataaatcactttatcttcaactc 36639918  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 8604622 - 8604593
Alignment:
Q  12 atgaatgtatccaaacataaatcactttac 41  Q
    ||||||||||||||||||||||||||||||    
T  8604622 atgaatgtatccaaacataaatcactttac 8604593  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 22250311 - 22250356
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactcgctttta 57  Q
    |||||||||||||||  |||||||||| || |||||||||||||||    
T  22250311 atgaatgtatccaaatgtaaatcacttcacattcaactcgctttta 22250356  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 33843796 - 33843841
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactcgctttta 57  Q
    |||||| ||||||||||||||||||||||| | |||||| ||||||    
T  33843796 atgaatatatccaaacataaatcactttacatccaactcactttta 33843841  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 54487289 - 54487248
Alignment:
Q  15 aatgtatccaaacataaatcactttacgttcaactcgctttt 56  Q
    ||||||||||||||||||||| ||||| |||||||| |||||    
T  54487289 aatgtatccaaacataaatcaatttacattcaactcactttt 54487248  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 17898121 - 17898085
Alignment:
Q  19 tatccaaacataaatcactttacgttcaactcgcttt 55  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  17898121 tatccaaacataaatcactttacattcaactcacttt 17898085  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 7012670 - 7012717
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||||    
T  7012670 tgaaggtatccaaacataaatcactttacattcaactcacttttaacc 7012717  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 37335034 - 37334948
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactcgcttttaaccggaccggaaacaattttatagaatcaattcacttaaaatcaaa 103  Q
    |||||||||| || |||||||||||||||| ||||||||  |||||  ||||     | |||||||||| ||||||||||||||||||||||    
T  37335034 atgaatgtattcagacataaatcactttaccttcaactcaattttagtcgga-----atcaattttatataatcaattcacttaaaatcaaa 37334948  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 1441406 - 1441362
Alignment:
Q  13 tgaatgtatccaaacataaatcactttacgttcaactcgctttta 57  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||    
T  1441406 tgaatgtatctaaacacaaatcactttacgttcaactcactttta 1441362  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 42644298 - 42644338
Alignment:
Q  19 tatccaaacataaatcactttacgttcaactcgcttttaac 59  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  42644298 tatccaaacataaatcactttacattcaactcacttttaac 42644338  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 10852775 - 10852737
Alignment:
Q  22 ccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  10852775 ccaaacataaatcactttacattcaactcacttttaacc 10852737  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 23918881 - 23918919
Alignment:
Q  22 ccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  23918881 ccaaacataaatcactttacattcaactcacttttaacc 23918919  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 41591353 - 41591315
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactc 50  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  41591353 atgaatgtatccaaacataaatcactttaaattcaactc 41591315  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 41596149 - 41596111
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactc 50  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  41596149 atgaatgtatccaaacagaaatcactttacattcaactc 41596111  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 44225600 - 44225641
Alignment:
Q  18 gtatccaaacataaatcactttacgttcaactcgcttttaac 59  Q
    |||||||||||||||||||||||| || ||||| ||||||||    
T  44225600 gtatccaaacataaatcactttacattaaactcacttttaac 44225641  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 31766242 - 31766202
Alignment:
Q  17 tgtatccaaacataaatcactttacgttcaactcgctttta 57  Q
    ||||||||||||||||||||||||  |||||||| ||||||    
T  31766242 tgtatccaaacataaatcactttaacttcaactcactttta 31766202  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 48089687 - 48089643
Alignment:
Q  15 aatgtatccaaacataaatcactttacgttcaactcgcttttaac 59  Q
    ||||||||||| ||||||||| ||||| |||||||| ||||||||    
T  48089687 aatgtatccaatcataaatcattttacattcaactcacttttaac 48089643  T

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Target: scaffold0361 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 14114 - 14076
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactc 50  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  14114 atgaatgtatccaaacataaatcactttaccttcaactc 14076  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 882771 - 882818
Alignment:
Q  12 atgaatgtatccaaacataaatcactttacgttcaactcgcttttaac 59  Q
    |||||||||||||||||||||||| ||||| ||||||||  |||||||    
T  882771 atgaatgtatccaaacataaatcattttaccttcaactcaattttaac 882818  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 34620974 - 34621009
Alignment:
Q  15 aatgtatccaaacataaatcactttacgttcaactc 50  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34620974 aatgtatccaaacataaatcactttaccttcaactc 34621009  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 34748411 - 34748446
Alignment:
Q  15 aatgtatccaaacataaatcactttacgttcaactc 50  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34748411 aatgtatccaaacataaatcactttaccttcaactc 34748446  T

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Target: scaffold0172 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 15323 - 15281
Alignment:
Q  18 gtatccaaacataaatcactttacgttcaactcgcttttaacc 60  Q
    |||||||||||||||||||||||  |||||||| |||||||||    
T  15323 gtatccaaacataaatcactttatattcaactcacttttaacc 15281  T

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