View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_49 (Length: 261)
Name: NF5413_low_49
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 36636793 - 36636528
Alignment:
| Q |
1 |
cggagaccatataccaatgcaaaaattacatttcattttcctggacattttccaaacaataatgatatatatggacaccgacttattttatatcggtgca |
100 |
Q |
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| T |
36636793 |
cggagaccatataccaatgcaaaaattacacttcattttcctggacattttccaaacaataatgatatatatggacacctacttattttatatcggtgca |
36636694 |
T |
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| Q |
101 |
atatcggcaatcacgtctagaaatgtggttaattcagttgacta-------atatatactcgactgaattaatca----tttacaagtgattaattaggt |
189 |
Q |
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| T |
36636693 |
atatcggcaatcacgtctagaaatatggttaattcaattgactaaataatgatatatactctactgaattaatcatacttttacaagtgattaattaggt |
36636594 |
T |
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| Q |
190 |
gtctcatgtgtatcctaaaatatgtatatgaaatattttgctgtttgaattccatattcatctcac |
255 |
Q |
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|||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
36636593 |
gtctcagatgtatgctaaaatatgtatatgaaatattttgttgtttgaattccatattcatatcac |
36636528 |
T |
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