View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5413_low_5 (Length: 582)

Name: NF5413_low_5
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5413_low_5
NF5413_low_5
[»] chr5 (5 HSPs)
chr5 (18-472)||(16518660-16519103)
chr5 (55-171)||(779084-779198)
chr5 (55-93)||(141936-141974)
chr5 (89-169)||(26663635-26663715)
chr5 (89-169)||(26935230-26935310)
[»] scaffold0009 (1 HSPs)
scaffold0009 (50-177)||(189061-189187)
[»] chr8 (4 HSPs)
chr8 (54-171)||(27055908-27056024)
chr8 (61-149)||(43631468-43631555)
chr8 (55-175)||(32646813-32646931)
chr8 (49-171)||(22209404-22209525)
[»] chr7 (8 HSPs)
chr7 (55-171)||(1360534-1360649)
chr7 (55-171)||(10031914-10032029)
chr7 (58-174)||(3256623-3256739)
chr7 (52-141)||(15995917-15996005)
chr7 (55-171)||(33887846-33887960)
chr7 (55-136)||(26048530-26048612)
chr7 (97-178)||(9533553-9533634)
chr7 (95-136)||(44495249-44495290)
[»] chr1 (11 HSPs)
chr1 (51-171)||(33744124-33744243)
chr1 (55-174)||(37037642-37037761)
chr1 (57-171)||(17554856-17554969)
chr1 (55-171)||(46830125-46830240)
chr1 (55-173)||(14774098-14774215)
chr1 (61-168)||(28672286-28672393)
chr1 (69-191)||(26687514-26687638)
chr1 (55-171)||(37705875-37705990)
chr1 (95-177)||(46370825-46370908)
chr1 (80-176)||(12590647-12590743)
chr1 (55-128)||(15549648-15549720)
[»] chr2 (12 HSPs)
chr2 (74-148)||(31513773-31513847)
chr2 (55-171)||(2888906-2889021)
chr2 (55-136)||(14102292-14102372)
chr2 (55-177)||(6581541-6581661)
chr2 (54-171)||(2825948-2826064)
chr2 (55-171)||(3882614-3882729)
chr2 (54-169)||(8964392-8964506)
chr2 (49-171)||(16717607-16717728)
chr2 (55-112)||(2517237-2517293)
chr2 (55-112)||(25622590-25622646)
chr2 (56-128)||(27948004-27948076)
chr2 (57-93)||(45303593-45303629)
[»] scaffold0291 (1 HSPs)
scaffold0291 (54-177)||(11656-11778)
[»] chr3 (8 HSPs)
chr3 (55-171)||(48322199-48322314)
chr3 (59-136)||(40392425-40392501)
chr3 (51-175)||(38457205-38457328)
chr3 (77-136)||(25548213-25548271)
chr3 (65-148)||(40546348-40546431)
chr3 (58-112)||(10921398-10921451)
chr3 (60-93)||(46188578-46188611)
chr3 (55-128)||(52309209-52309281)
[»] chr4 (10 HSPs)
chr4 (55-171)||(47560624-47560738)
chr4 (55-193)||(31177193-31177332)
chr4 (55-136)||(44670822-44670903)
chr4 (54-171)||(2137184-2137300)
chr4 (98-171)||(10575987-10576059)
chr4 (55-108)||(32692945-32692997)
chr4 (57-169)||(47247767-47247878)
chr4 (55-171)||(50086401-50086516)
chr4 (59-107)||(50775023-50775070)
chr4 (54-94)||(51105996-51106036)
[»] chr6 (5 HSPs)
chr6 (79-128)||(3046565-3046614)
chr6 (55-157)||(13070499-13070599)
chr6 (55-108)||(13063874-13063926)
chr6 (83-135)||(6546740-6546791)
chr6 (57-177)||(30509308-30509427)


Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 16519103 - 16518660
Alignment:
Q  18 atatttcgttgggaaatgtcaatgaatacctccggatactctttaaggaccataagtagtaaatatttatgaaaataa-tgtgtaatcaatgcattacaa 116  Q
    |||||| |||||| ||||||||||||| | |||||| ||||||||||||||| ||| |||||||||||||||||| || ||||||||||||||||||| |    
T  16519103 atattttgttggggaatgtcaatgaatgcttccggacactctttaaggaccacaagcagtaaatatttatgaaaaaaaatgtgtaatcaatgcattacca 16519004  T
Q  117 atcgaaaaatttaaatttttgtaaaaataattgctaattttcaaatgcttaaagaatgttcagggtactcgttaacannnnnnnnnaatactttatttat 216  Q
    ||||||| ||||| ||||||  ||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||         ||||||||||||||    
T  16519003 atcgaaacatttacattttttaaaaaataattgctaattttaaaatgtttacagaatgttcggggtactcgttaacaattttttttaatactttatttat 16518904  T
Q  217 gtggttttgggtagagaagacattgttcttgctcctagatagagatataccttacatgcaacgggtgtgcannnnnnnnnnnaaatcagcaaattagagt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||       
T  16518903 gtggttttgggtagagaagacattgttcttgctcctagatagagatataccttacatgcaacgggtgtgcatttttttttttaaatcagcaaattag--- 16518807  T
Q  317 atattagaaaagagtacaagtaatactcaacacatatacaaccatgaacaatannnnnnnggggaaagttcaatataagaaggattttacgatcatttga 416  Q
             ||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||     
T  16518806 ---------aagagtacaagtaatactcaacaaatatacaaccatgaacaatttttttttggggaaagttcaatataagaaggattttacgatcatttgc 16518716  T
Q  417 acggtagtaagtatatattgtgttggtttattaaagaattatatcgaactacagag 472  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16518715 acggtagtaagtatatattgtgttggtttattaaagaattacatcgaactacagag 16518660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 779198 - 779084
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    ||||| ||||||| |||| |||||  |||||| ||||| | |||||||||||||||||  ||||||||| |||||| |||||  |||||||||| |||||    
T  779198 actctctaaggactataaatagtatgtatttacgaaaa-agtgtgtaatcaatgcattggaaatcgaaacatttaacttttt-aaaaaataattactaat 779101  T
Q  155 tttcaaatgcttaaaga 171  Q
    |||  |||| |||||||    
T  779100 ttttgaatgtttaaaga 779084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 141974 - 141936
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaat 93  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  141974 actctttaaggaccataagtaataagtatttatgaaaat 141936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 26663715 - 26663635
Alignment:
Q  89 aaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaattttcaaatgcttaaa 169  Q
    |||| |||||||||||||| ||||  ||||||||| |||| | |||||  |||||||||| || |||||  ||||||||||    
T  26663715 aaaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaaa 26663635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 26935310 - 26935230
Alignment:
Q  89 aaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaattttcaaatgcttaaa 169  Q
    |||| |||||||||||||| ||||  ||||||||| |||| | |||||  |||||||||| || |||||  ||||||||||    
T  26935310 aaaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaaa 26935230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 189187 - 189061
Alignment:
Q  50 cggatactctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattg 149  Q
    |||||||||||||| |||||||| || ||| |||||||||||||| |||||||| |||| |||| |||| |||| |||||| |||||  || ||||||||    
T  189187 cggatactctttaatgaccataaataataagtatttatgaaaata-tgtgtaattaatgtattagaaatagaaatatttaacttttttaaagaataattg 189089  T
Q  150 ctaattttcaaatgcttaaagaatgttc 177  Q
    || ||||| ||||||||||||| |||||    
T  189088 cttattttaaaatgcttaaagagtgttc 189061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 27056024 - 27055908
Alignment:
Q  54 tactctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaa 153  Q
    |||||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||  ||||||||| |||||| ||| | |  |||||||| || |    
T  27056024 tactctttaaggactataagtagtaattatttatgaaaa-aatgtgtaatcaatacattggaaatcgaaacatttaactttcttttgaaataatttctta 27055926  T
Q  154 ttttcaaatgcttaaaga 171  Q
    |||| |||||||||||||    
T  27055925 ttttaaaatgcttaaaga 27055908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 43631468 - 43631555
Alignment:
Q  61 taaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattg 149  Q
    ||||||||||||||||||  ||||||| |||||| |||||||||||||||||| ||||  ||| |||| | ||||| || |||||||||    
T  43631468 taaggaccataagtagtatgtatttataaaaata-tgtgtaatcaatgcattagaaattaaaatatttgattttttttataaataattg 43631555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 175
Target Start/End: Complemental strand, 32646931 - 32646813
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    ||||||||| || |||||||||||| |||||||||||   || |||||||||||||||| ||||  ||| |||| | |||||  || |||||||| | ||    
T  32646931 actctttaatgatcataagtagtaagtatttatgaaa--tatatgtaatcaatgcattaaaaattaaaatatttgactttttaaaagaataattgtttat 32646834  T
Q  155 tttcaaatgcttaaagaatgt 175  Q
    ||| ||||| ||||| |||||    
T  32646833 tttaaaatgtttaaaaaatgt 32646813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 22209525 - 22209404
Alignment:
Q  49 ccggatactctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataatt 148  Q
    ||||| ||| |||||  ||||||| |||||| ||||||||||||| || |||||||||||  ||  ||||| ||| |||||| |||||  |  |||||||    
T  22209525 ccggacactatttaaaaaccataaatagtaagtatttatgaaaat-atatgtaatcaatgtcttggaaatcaaaatatttaacttttttaaggaataatt 22209427  T
Q  149 gctaattttcaaatgcttaaaga 171  Q
    |||  |||| |||||||||||||    
T  22209426 gcttcttttaaaatgcttaaaga 22209404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 1360649 - 1360534
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    ||||||||||||| ||||||||||  ||||||| |||| | |||||||||||||||||  ||||||||| |||||| |||||  |||||||||| |||||    
T  1360649 actctttaaggactataagtagtatgtatttataaaaa-agtgtgtaatcaatgcattggaaatcgaaacatttaacttttttaaaaaataattactaat 1360551  T
Q  155 tttcaaatgcttaaaga 171  Q
    |||  ||||||||||||    
T  1360550 tttggaatgcttaaaga 1360534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 10031914 - 10032029
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    ||||||||||||| |||| |||||  |||||||||||| | |||||||||||||||||  ||||||||| |||||| |||||  |||||||||| |||||    
T  10031914 actctttaaggactataaatagtatgtatttatgaaaa-agtgtgtaatcaatgcattggaaatcgaaacatttaactttttaaaaaaataattactaat 10032012  T
Q  155 tttcaaatgcttaaaga 171  Q
    |||  ||||||||||||    
T  10032013 tttggaatgcttaaaga 10032029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 3256623 - 3256739
Alignment:
Q  58 ctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaa-aataattgctaattt 156  Q
    |||||||||||||||||  ||| ||||||||||||| ||||||| ||| ||||||  ||||||||| |||| | ||||| |||| |||||||||| ||||    
T  3256623 ctttaaggaccataagtgataagtatttatgaaaat-atgtgtattcagtgcattggaaatcgaaacatttgactttttttaaagaataattgcttattt 3256721  T
Q  157 tcaaatgcttaaagaatg 174  Q
    | ||||||||||||||||    
T  3256722 tgaaatgcttaaagaatg 3256739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 15996005 - 15995917
Alignment:
Q  52 gatactctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaa 141  Q
    |||||| |||||| |||||  |||| || || ||||||||||| |||||||||||||||||  ||||||||| |||||| ||||| ||||    
T  15996005 gatactttttaagaaccattcgtagcaagtaattatgaaaata-tgtgtaatcaatgcattgaaaatcgaaatatttaactttttttaaa 15995917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 33887846 - 33887960
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    ||||||||| || |||||| ||||| |||||||||||||||  |||||||||||||||  |||| |||| |||| | |||||  || |||||||  | ||    
T  33887846 actctttaaagatcataagaagtaagtatttatgaaaataa--tgtaatcaatgcattgaaaattgaaatatttgacttttttaaagaataattatttat 33887943  T
Q  155 tttcaaatgcttaaaga 171  Q
    |||  ||||||||||||    
T  33887944 tttggaatgcttaaaga 33887960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 26048530 - 26048612
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaa--tgcattacaaatcgaaaaatttaaattttt 136  Q
    |||| |||||||  ||||||||||| |||| ||||||| |||||||||||||  ||||||  |||||||||||||||| |||||    
T  26048530 actcgttaaggattataagtagtaactattcatgaaaa-aatgtgtaatcaaaatgcattgaaaatcgaaaaatttaacttttt 26048612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 9533553 - 9533634
Alignment:
Q  97 gtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaattttcaaatgcttaaagaatgttca 178  Q
    ||||||||||||||||  ||||| ||| |||| | |||||  |||||||||||||  |||| | ||||||||| ||||||||    
T  9533553 gtgtaatcaatgcattgaaaatcaaaatattttattttttaaaaaaataattgcttgttttgatatgcttaaaaaatgttca 9533634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 44495290 - 44495249
Alignment:
Q  95 atgtgtaatcaatgcattacaaatcgaaaaatttaaattttt 136  Q
    |||||||||||||| |||| ||||||||| ||||||||||||    
T  44495290 atgtgtaatcaatgaattaaaaatcgaaatatttaaattttt 44495249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 33744124 - 33744243
Alignment:
Q  51 ggatactctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgc 150  Q
    ||||||||||||| ||| |||||||| || |||||||||||| ||| |||||||||||||||  ||||||||| |||| | |||||  |||||||||| |    
T  33744124 ggatactctttaacgactataagtagaaagtatttatgaaaa-aatatgtaatcaatgcattgaaaatcgaaatatttgactttttaaaaaaataattac 33744222  T
Q  151 taattttcaaatgcttaaaga 171  Q
    | ||||| |||||||||||||    
T  33744223 ttattttaaaatgcttaaaga 33744243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 55 - 174
Target Start/End: Complemental strand, 37037761 - 37037642
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    ||||||||| ||  |||| || || ||||||||||||| ||||||||||||||| |||  |||| |||| |||||| ||||| ||||||||||| ||| |    
T  37037761 actctttaaagattataaataatatatatttatgaaaaaaatgtgtaatcaatgtattggaaattgaaacatttaactttttttaaaaataattactatt 37037662  T
Q  155 tttcaaatgcttaaagaatg 174  Q
    ||| ||||||||||||||||    
T  37037661 tttaaaatgcttaaagaatg 37037642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 171
Target Start/End: Complemental strand, 17554969 - 17554856
Alignment:
Q  57 tctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaattt 156  Q
    ||||||||||||||||||| ||| |||||||||||| ||| | |||||||||||||  |||| |||| |||||| |||||  ||||||||||| | ||||    
T  17554969 tctttaaggaccataagtaataactatttatgaaaa-aatatataatcaatgcattgtaaattgaaacatttaacttttttaaaaaataattgtttattt 17554871  T
Q  157 tcaaatgcttaaaga 171  Q
    | ||||| |||||||    
T  17554870 tgaaatgtttaaaga 17554856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 46830125 - 46830240
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    ||||||||| ||| ||||||||||| |||||||||||| || |||||||||||||  |  ||||  ||| |||||| ||||| |||||||||||| | ||    
T  46830125 actctttaaagactataagtagtaagtatttatgaaaa-aacgtgtaatcaatgcggtgaaaattaaaacatttaactttttttaaaaataattgtttat 46830223  T
Q  155 tttcaaatgcttaaaga 171  Q
    |||  ||||||||||||    
T  46830224 tttataatgcttaaaga 46830240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 14774215 - 14774098
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    ||||||||||||  |||||||||| ||||||||||||||  ||| || ||||||||||  ||||||||| |||| | |||||  | ||||||||| | ||    
T  14774215 actctttaaggattataagtagtacatatttatgaaaat-gtgtatattcaatgcattgaaaatcgaaatatttgattttttaaacaaataattgattat 14774117  T
Q  155 tttcaaatgcttaaagaat 173  Q
    |||  ||||||||||||||    
T  14774116 tttagaatgcttaaagaat 14774098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 28672286 - 28672393
Alignment:
Q  61 taaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaattttcaa 160  Q
    |||||| |||||||| ||| ||||||| ||||  ||||||||||||||||||  ||||| ||| |||| | |||||  ||||||||||| | |||||  |    
T  28672286 taaggatcataagtaataagtatttataaaaaatatgtgtaatcaatgcatttaaaatcaaaatatttgacttttttaaaaaataattgtttattttaga 28672385  T
Q  161 atgcttaa 168  Q
    ||||||||    
T  28672386 atgcttaa 28672393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 191
Target Start/End: Complemental strand, 26687638 - 26687514
Alignment:
Q  69 ataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaa-ataattgctaattttcaaatgctta 167  Q
    ||||| ||||| |||||||||||| | |||||||| ||||||||  ||||||||| |||| | ||||| ||||| || |||||| |||||  ||||||||    
T  26687638 ataaggagtaactatttatgaaaa-agtgtgtaattaatgcattgaaaatcgaaatatttgactttttttaaaagattattgcttattttagaatgctta 26687540  T
Q  168 aagaatgttc--agggtactcgttaa 191  Q
    |||| |||||  |||| |||||||||    
T  26687539 aagagtgttccgagggcactcgttaa 26687514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 37705990 - 37705875
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    |||||| || ||| |||||||| || |||||||||||| || ||||||| ||||||||  ||||| ||| |||| | ||||   |||||||||| || ||    
T  37705990 actcttcaatgactataagtagcaagtatttatgaaaa-aacgtgtaattaatgcattgaaaatcaaaacatttgagttttctaaaaaataattactcat 37705892  T
Q  155 tttcaaatgcttaaaga 171  Q
    |||| ||||||||||||    
T  37705891 tttcgaatgcttaaaga 37705875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 46370908 - 46370825
Alignment:
Q  95 atgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaa-aataattgctaattttcaaatgcttaaagaatgttc 177  Q
    |||||||||||| |||||  |||||||||  ||||||||||| |||| ||||||||||  |||| | ||||||||||| |||||    
T  46370908 atgtgtaatcaacgcattgaaaatcgaaatgtttaaatttttttaaagaataattgcttgttttgatatgcttaaagagtgttc 46370825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 12590647 - 12590743
Alignment:
Q  80 atatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaa-ataattgctaattttcaaatgcttaaagaatgtt 176  Q
    |||||||||||||||  ||||| ||||||||||  ||||| ||| |||||| ||||| ||| | ||||||| | | ||| ||||||||||||||||||    
T  12590647 atatttatgaaaatac-gtgtattcaatgcattgaaaatcaaaatatttaactttttttaatagataattgtttaatttaaaatgcttaaagaatgtt 12590743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 15549720 - 15549648
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaattt 128  Q
    ||||||||| ||| |||||||| || ||||||| |||||  |||||||||||||||||  ||||||||| ||||    
T  15549720 actctttaaagactataagtagcaagtatttataaaaatg-tgtgtaatcaatgcattgaaaatcgaaatattt 15549648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 31513847 - 31513773
Alignment:
Q  74 tagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataatt 148  Q
    |||||| |||||||||||| |||||||||||||||||||  ||||||||| |||||||||||| |||||||||||    
T  31513847 tagtaactatttatgaaaaaaatgtgtaatcaatgcattggaaatcgaaacatttaaatttttataaaaataatt 31513773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 2889021 - 2888906
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    ||||||||||||| ||||||||||  |||||||||||| | |||||| ||||| ||||  ||||||||| |||||| |||||  |||||||||| | |||    
T  2889021 actctttaaggactataagtagtatgtatttatgaaaa-agtgtgtagtcaatacattggaaatcgaaatatttaacttttttaaaaaataattacaaat 2888923  T
Q  155 tttcaaatgcttaaaga 171  Q
    ||| || ||||||||||    
T  2888922 tttgaagtgcttaaaga 2888906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 14102292 - 14102372
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaattttt 136  Q
    ||||||||||||| ||||||||||| |||||||||||| | ||||||||||||| |||  ||||||||| |||||| |||||    
T  14102292 actctttaaggactataagtagtaactatttatgaaaa-agtgtgtaatcaatgtattggaaatcgaaatatttaacttttt 14102372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 6581661 - 6581541
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    |||||||||| || ||||||||||| |||||||||||| | |||||||||||||||||   |||| ||| ||||  |||||| ||||||| ||| || ||    
T  6581661 actctttaagaactataagtagtaactatttatgaaaa-agtgtgtaatcaatgcattgagaatcaaaacattt-gatttttttaaaaattattacttat 6581564  T
Q  155 tttcaaatgcttaaagaatgttc 177  Q
    |||  |||||||||||| |||||    
T  6581563 tttataatgcttaaagagtgttc 6581541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 2825948 - 2826064
Alignment:
Q  54 tactctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaa 153  Q
    |||||||||||  | ||||||||||| ||||||| |||||  |||||||||||||||||  ||||||||| |||| | |||||  |||||||||| || |    
T  2825948 tactctttaagagctataagtagtaagtatttataaaaatg-tgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatttctta 2826046  T
Q  154 ttttcaaatgcttaaaga 171  Q
    ||||   |||||||||||    
T  2826047 ttttagtatgcttaaaga 2826064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 3882729 - 3882614
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    |||||||||| |||||||||||||| || | ||||||||  |||||||||||||||||  ||| ||||| |||| |  ||||  || |||||||||| ||    
T  3882729 actctttaagaaccataagtagtaagtactcatgaaaatg-tgtgtaatcaatgcattgaaaaccgaaatatttgacctttttaaagaataattgcttat 3882631  T
Q  155 tttcaaatgcttaaaga 171  Q
    |||  ||||||||||||    
T  3882630 tttagaatgcttaaaga 3882614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 169
Target Start/End: Complemental strand, 8964506 - 8964392
Alignment:
Q  54 tactctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaa 153  Q
    |||||||||||||||||| ||| ||| |||||||||||||  |||||||||||||||||  |||| |||| |||| | |||||  || ||||||| || |    
T  8964506 tactctttaaggaccatatgtaataagtatttatgaaaat-ttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattactta 8964408  T
Q  154 ttttcaaatgcttaaa 169  Q
     |||  ||||||||||    
T  8964407 atttagaatgcttaaa 8964392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 16717728 - 16717607
Alignment:
Q  49 ccggatactctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataatt 148  Q
    ||||| |||||||||||| |||||||||||| |||||||||||||    | |||||||||| ||  ||||| ||| |||||| |||||  || |||||||    
T  16717728 ccggacactctttaaggaacataagtagtaagtatttatgaaaat-gcatataatcaatgctttggaaatcaaaatatttaatttttttaaagaataatt 16717630  T
Q  149 gctaattttcaaatgcttaaaga 171  Q
     || |||||  ||||||||||||    
T  16717629 acttattttagaatgcttaaaga 16717607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 2517237 - 2517293
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcatt 112  Q
    |||||||||||| ||||| |||||| ||||||||||||| | ||||||||||||||||    
T  2517237 actctttaaggatcataaatagtaagtatttatgaaaat-acgtgtaatcaatgcatt 2517293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 25622646 - 25622590
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcatt 112  Q
    ||||||||||| | |||||||||||||||||||||||| ||| |||||| ||||||||    
T  25622646 actctttaaggtctataagtagtaaatatttatgaaaa-aatatgtaattaatgcatt 25622590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 27948004 - 27948076
Alignment:
Q  56 ctctttaaggaccataagtagtaaatatttatgaaaataatgtg-taatcaatgcattacaaatcgaaaaattt 128  Q
    ||||||||||| |||||||||||| |||||||||||||  |||| |||||||||||||  ||||||||| ||||    
T  27948004 ctctttaaggatcataagtagtaagtatttatgaaaat-gtgtgttaatcaatgcattggaaatcgaaacattt 27948076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 45303629 - 45303593
Alignment:
Q  57 tctttaaggaccataagtagtaaatatttatgaaaat 93  Q
    |||||||||||||||| |||||| |||||||||||||    
T  45303629 tctttaaggaccataaatagtaagtatttatgaaaat 45303593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 11656 - 11778
Alignment:
Q  54 tactctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaa 153  Q
    ||||||| |||||  ||||||||||| |||||||||||| ||||||||||||| |||||  ||||||||| |||| | ||||   |||| |||||||| |    
T  11656 tactcttgaaggattataagtagtaactatttatgaaaa-aatgtgtaatcaaagcatttgaaatcgaaacatttgacttttctaaaaattaattgctta 11754  T
Q  154 ttttcaaatgcttaaagaatgttc 177  Q
    |||| ||||||||||||| |||||    
T  11755 ttttgaaatgcttaaagagtgttc 11778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 48322199 - 48322314
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    ||||||||||||||||||||||||  |||||||||||| ||  ||||||||||| |||  ||||||||| |||| | |||||  |||||||||| || ||    
T  48322199 actctttaaggaccataagtagtaggtatttatgaaaa-aacatgtaatcaatgtattggaaatcgaaacatttgactttttaaaaaaataattacttat 48322297  T
Q  155 tttcaaatgcttaaaga 171  Q
    |||  ||||||||||||    
T  48322298 tttagaatgcttaaaga 48322314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 40392501 - 40392425
Alignment:
Q  59 tttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaattttt 136  Q
    |||||||| |||||||||||||||||||||||||| || |||||||||||||||| ||||  ||| |||||| |||||    
T  40392501 tttaaggaacataagtagtaaatatttatgaaaat-atatgtaatcaatgcattagaaataaaaatatttaacttttt 40392425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 38457205 - 38457328
Alignment:
Q  51 ggatactcttt-aaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattg 149  Q
    ||||||||||| ||| ||||||| |||||| |||||| |||||||   |||||||||||||||  ||||| ||| |||| |||||||  || ||||||||    
T  38457205 ggatactcttttaagaaccataaatagtaagtatttacgaaaataca-tgtaatcaatgcattgaaaatcaaaatattt-aattttttaaagaataattg 38457302  T
Q  150 ctaattttcaaatgcttaaagaatgt 175  Q
    || ||| |  ||||||||||||||||    
T  38457303 cttattatagaatgcttaaagaatgt 38457328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 25548213 - 25548271
Alignment:
Q  77 taaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaattttt 136  Q
    ||||| |||||||||||| |||||||||||||||||| |||| |||| |||||| |||||    
T  25548213 taaatttttatgaaaata-tgtgtaatcaatgcattagaaattgaaatatttaacttttt 25548271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 40546431 - 40546348
Alignment:
Q  65 gaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataatt 148  Q
    ||||||||||||||| ||||||||||||     |||||||||||||||  ||||||||| |||| | |||||  ||||||||||    
T  40546431 gaccataagtagtaagtatttatgaaaaatgcatgtaatcaatgcattggaaatcgaaatatttgacttttttaaaaaataatt 40546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 10921451 - 10921398
Alignment:
Q  58 ctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcatt 112  Q
    |||| ||||||||||||||||| ||||||||||||| |||||| || ||||||||    
T  10921451 ctttcaggaccataagtagtaagtatttatgaaaat-atgtgtgattaatgcatt 10921398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 46188578 - 46188611
Alignment:
Q  60 ttaaggaccataagtagtaaatatttatgaaaat 93  Q
    |||||||||||||||||||| |||||||||||||    
T  46188578 ttaaggaccataagtagtaagtatttatgaaaat 46188611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 52309281 - 52309209
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaattt 128  Q
    ||||||||||| | |||||||| || ||||||| ||||||  ||||||||||||||||  ||||||||| ||||    
T  52309281 actctttaagggctataagtagcaagtatttataaaaatac-gtgtaatcaatgcattggaaatcgaaatattt 52309209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 47560738 - 47560624
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    |||||||||||||||||| |||||| |||| ||||||||   |||||||||||| |||| ||||| ||| ||||  |||||| |||||||||||||| ||    
T  47560738 actctttaaggaccataaatagtaagtattaatgaaaat-gcgtgtaatcaatgtattaaaaatcaaaacattt-gatttttttaaaaataattgcttat 47560641  T
Q  155 tttcaaatgcttaaaga 171  Q
    |||  |||| |||||||    
T  47560640 tttggaatgattaaaga 47560624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 31177332 - 31177193
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    |||||||||||||||||||||  || ||||||| |||| |||||||||| ||||||||  ||||| ||| |||||| ||||   |||||||||  || ||    
T  31177332 actctttaaggaccataagtaacaagtatttat-aaaaaaatgtgtaattaatgcattgaaaatcaaaatatttaatttttaaaaaaaataataactcat 31177234  T
Q  155 tttcaaatgcttaaagaatgttc--agggtactcgttaaca 193  Q
    |||  ||||  |||| |||||||  ||| ||||||||||||    
T  31177233 tttagaatgtataaaaaatgttctgaggatactcgttaaca 31177193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 44670822 - 44670903
Alignment:
Q  55 actctttaaggaccataagta-gtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaattttt 136  Q
    ||||||||||||||||||||| | |||||||||| ||||| || |||||| | ||||||  ||||||||| |||||| |||||    
T  44670822 actctttaaggaccataagtaggaaaatatttataaaaat-atatgtaattattgcattggaaatcgaaatatttaatttttt 44670903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 2137300 - 2137184
Alignment:
Q  54 tactctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaa 153  Q
    |||| |||||| | |||||||| ||| ||||||||||||| |||||||||||||  |||| ||||| ||| |||| |  ||||  || ||||||  || |    
T  2137300 tactgtttaagaatcataagtaataagtatttatgaaaat-atgtgtaatcaatatattataaatcaaaatatttgatatttttaaacaataataactta 2137202  T
Q  154 ttttcaaatgcttaaaga 171  Q
    |||| |||||||||||||    
T  2137201 ttttaaaatgcttaaaga 2137184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 10576059 - 10575987
Alignment:
Q  98 tgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaattttcaaatgcttaaaga 171  Q
    |||||||||||||||  ||||| ||| |||| | |||||| |||||||||| || ||||| |||||||||||||    
T  10576059 tgtaatcaatgcattggaaatcaaaatatttgattttttg-aaaaataattacttattttaaaatgcttaaaga 10575987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 32692945 - 32692997
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatg 108  Q
    |||||||||||||||| | |||||| | ||||||||||| ||||||||||||||    
T  32692945 actctttaaggaccattaatagtaagtttttatgaaaat-atgtgtaatcaatg 32692997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 47247767 - 47247878
Alignment:
Q  57 tctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaattt 156  Q
    |||||||||| ||||||| |||| |||||||||||| ||| ||||| ||||| |||  |||| |||| || |||  ||||  | ||||||||||| ||||    
T  47247767 tctttaaggatcataagttgtaagtatttatgaaaa-aatttgtaaccaatgtattgaaaattgaaacatataacatttttaataaataattgcttattt 47247865  T
Q  157 tcaaatgcttaaa 169  Q
    |  ||||||||||    
T  47247866 tataatgcttaaa 47247878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 50086401 - 50086516
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    |||||||||| || |||||| ||||  |||||||||||| ||||||| ||||||||||  ||||| ||| |||| | |||||  || |||||||| | ||    
T  50086401 actctttaagaactataagtggtaagcatttatgaaaat-atgtgtattcaatgcattgaaaatcaaaatatttgatttttttaaagaataattgtttat 50086499  T
Q  155 tttcaaatgcttaaaga 171  Q
    |||  |||| |||||||    
T  50086500 tttggaatgtttaaaga 50086516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 50775070 - 50775023
Alignment:
Q  59 tttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaat 107  Q
    |||||| | |||||||| ||||||||||||||||| |||||||||||||    
T  50775070 tttaagaatcataagtaataaatatttatgaaaat-atgtgtaatcaat 50775023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 51106036 - 51105996
Alignment:
Q  54 tactctttaaggaccataagtagtaaatatttatgaaaata 94  Q
    ||||||||||| ||||||| |||||| ||||||||||||||    
T  51106036 tactctttaagaaccataaatagtaactatttatgaaaata 51105996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 3046614 - 3046565
Alignment:
Q  79 aatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaattt 128  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||| ||||    
T  3046614 aatatttatgaaaaaaatatgtaatcaatgcattagaaatcgaaatattt 3046565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 13070499 - 13070599
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaat 154  Q
    |||||||||| || |||| |||||| |||||||||||| ||||||||||||||| |||  |||||  || |||||| |||||  |||||| |||||| ||    
T  13070499 actctttaag-actataaatagtaactatttatgaaaa-aatgtgtaatcaatgtattggaaatcacaacatttaactttttaaaaaaattattgcttat 13070596  T
Q  155 ttt 157  Q
    |||    
T  13070597 ttt 13070599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 13063874 - 13063926
Alignment:
Q  55 actctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatg 108  Q
    ||||||||||||| |||| |||||| |||||||||||| | |||||||||||||    
T  13063874 actctttaaggactataaatagtaactatttatgaaaa-agtgtgtaatcaatg 13063926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 6546740 - 6546791
Alignment:
Q  83 tttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttt 135  Q
    |||||||||||| |||| ||||||||||||| |||| ||||||||||| ||||    
T  6546740 tttatgaaaata-tgtgcaatcaatgcattagaaattgaaaaatttaactttt 6546791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 30509427 - 30509308
Alignment:
Q  57 tctttaaggaccataagtagtaaatatttatgaaaataatgtgtaatcaatgcattacaaatcgaaaaatttaaatttttgtaaaaataattgctaattt 156  Q
    ||||||||||| |||| ||| || ||||||| ||||||   |||||||||||||||  |||||||||  ||| | |||||  || |||||||||| ||||    
T  30509427 tctttaaggactataaatagcaagtatttataaaaataca-tgtaatcaatgcattgaaaatcgaaatgtttgatttttttaaagaataattgcttattt 30509329  T
Q  157 tcaaatgcttaaagaatgttc 177  Q
    |   ||||||||||| |||||    
T  30509328 tggtatgcttaaagagtgttc 30509308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University