View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5413_low_57 (Length: 251)
Name: NF5413_low_57
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_57 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 44603579 - 44603361
Alignment:
| Q |
1 |
aaatgggaatctagtcctgatatttttggtcaattttctgctgatcctgatcaagaatctaacttaactccatgaattctcagtgattgattagatattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44603579 |
aaatgggaatctagtcctgatatttttggtcaattttctgctgatcctgatcaagaatctaacttaactccatgaattctcagtgattgattagatattc |
44603480 |
T |
|
| Q |
101 |
atagacattcttgtcatcattaatacttatttgagcattaaagaaaatagtttgattaaaggtttgatgtgtatagatgcatgtatagaatgcaatgttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44603479 |
atagacattcttgtcatcattaatacttatttgagcattaaagaaaatattttgattaaaggtttgatgtgtatagatgcatgtagagaatgcaatgttt |
44603380 |
T |
|
| Q |
201 |
gttctcaataaagtaagta |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
44603379 |
gttctcaataaagtaagta |
44603361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University