View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_6 (Length: 556)
Name: NF5413_low_6
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 12 - 538
Target Start/End: Original strand, 39394353 - 39394879
Alignment:
| Q |
12 |
atgaaaaaggtagcagagaaaaccaatgacatgattgatgaagtaattgccgcaaagaaggtttcagaaccaaaaaacaaccatagtgaaatatcattaa |
111 |
Q |
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| T |
39394353 |
atgaaaaaggtagctgagaaaaccaatgacatgattgatgaagtaattgccgcaaagaaggtttcagaaccaaaaaacaaccatagtgaaatatcattaa |
39394452 |
T |
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| Q |
112 |
aacatgaacaacaattgtcggagaaagatgatttgttgtctgagtacaagaggaaacttcaagaatcagaggcagaattggaaaaaagaaaagaatcaga |
211 |
Q |
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| T |
39394453 |
aacatgaacaacaattgtcggagaaagatgttttgttgtctgagtacaagaggaaacttcaagaatcagaggcagaattggaaaaaagaaaagaatcaga |
39394552 |
T |
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| Q |
212 |
agccaatttgtttgatacattggtgatgcaaacaaaacagctagaacataataaggttttacttgaagagtcaaggcttgaaattggttctcttgnnnnn |
311 |
Q |
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| T |
39394553 |
agccaatttgtttgatacattggtgatgcaaacaaaacagctagaacataataaggttttacttgaagagtcaaagcttgaaattggttctcttgaagaa |
39394652 |
T |
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| Q |
312 |
nnnttaaagacacttcaattaggcgaaaacaaaatcaaagatttagaggataagaaagtaactgagaaagagttgccaaagatcaaggtaaaggaaactc |
411 |
Q |
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| T |
39394653 |
aaattaaagacacttcaattaggcgaaaacaaaatcaaagatttagaggataagaaagtaactgagaaagagttgccaaagatcaaggtaaaggaaactc |
39394752 |
T |
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| Q |
412 |
aaaagggtgttggagagggacaatctatgaaggcggaaaatttaattgaacaattgaatatgcttaagagcgaattgaaatcagcaacaaaagcggaaga |
511 |
Q |
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| T |
39394753 |
aaaagggtgttggagagggacaatctatgaaggcggaaaatttaattgaacaattgaatatgcttaagagcgaattgaaatcagcaacaaaagcggaaga |
39394852 |
T |
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| Q |
512 |
gaatagcaaaaaagcaatggacgattt |
538 |
Q |
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| T |
39394853 |
gaatagcaagaaagcaatggacgattt |
39394879 |
T |
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