View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_63 (Length: 245)
Name: NF5413_low_63
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 31844659 - 31844436
Alignment:
| Q |
10 |
catcatcagaagattacatgatgaatggttgttatccatggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcact |
109 |
Q |
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| T |
31844659 |
catcatcagaagattacatgatgaatggttgttatccatggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcact |
31844560 |
T |
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| Q |
110 |
tggaggtcacatgaatgttcatagaagggatagagcaaggcttagacaatcatcaccaccaacaactcatgaaccagctcaa---attcaaggttcttct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |
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| T |
31844559 |
tggaggtcacatgaatgttcatagaagggatagagcaaggcttagacaatcatcaccaccaacaactcatgaaccagctcaacttaatgaaggttcttct |
31844460 |
T |
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| Q |
207 |
atgcttaatcttaaccttaataac |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
31844459 |
atgcttaatcttaaccttaataac |
31844436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 6889922 - 6889821
Alignment:
| Q |
47 |
atggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagca |
146 |
Q |
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| T |
6889922 |
atggccaccaagatcatattcttgtagcttttgtagaagagagtttaggtcagcacaagcattaggtggacatatgaatgttcatagaaaagatagagca |
6889823 |
T |
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| Q |
147 |
ag |
148 |
Q |
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|| |
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| T |
6889822 |
ag |
6889821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 34522585 - 34522688
Alignment:
| Q |
48 |
tggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagcaa |
147 |
Q |
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||||||||||||| || |||||| |||||||| || |||||||| || |||||||| ||||| |||||||||||| ||||||| || |||||||| | |
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| T |
34522585 |
tggccaccaagattttattcatgtaacttttgtaaaagagagtttaggtctgctcaagctcttggtggtcacatgaatattcataggagagatagagcta |
34522684 |
T |
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| Q |
148 |
ggct |
151 |
Q |
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|||| |
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| T |
34522685 |
ggct |
34522688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 4830959 - 4831043
Alignment:
| Q |
46 |
catggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttca |
130 |
Q |
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| T |
4830959 |
catggccaccaaggtcctacacctgtaccttttgcagaagagagttccggtcagctcaagctcttggtggtcacatgaatgttca |
4831043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 30726717 - 30726619
Alignment:
| Q |
47 |
atggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttcatagaagggatagagc |
145 |
Q |
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|||||| |||||||| ||| ||||| ||| |||| || |||||||| || |||||||| | || ||||||||||||||||||||||| |||||||| |
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| T |
30726717 |
atggcctccaagatcttactcatgtcacttctgtaaaagagagtttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatagagc |
30726619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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