View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_68 (Length: 243)
Name: NF5413_low_68
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 37820093 - 37819869
Alignment:
| Q |
1 |
atggttatagtatatgttgctgaaaccaaagccaaagatttaacatagaggatttgttgcaaggatcccctgaaaattttgaaaatttgtttgtattcac |
100 |
Q |
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| T |
37820093 |
atggttatagtatatgttgctgaaaccaaagccaaagatttaacatagaggatttgttgcaaggatcccctgaaaattttgaaaatttgtttgtattcac |
37819994 |
T |
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| Q |
101 |
acataatcctcacttaaattactgtataaaattaggtacttgtgtaatagaaattttacccaaataatccacaaagaaaagcttggaatagcaccgttcc |
200 |
Q |
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| T |
37819993 |
acataatcctcacttaaattactgtataaaataaggtacctgtgtaatagaaattttacccaaataatccacaaagaaaagcttggaatagcaccgttcc |
37819894 |
T |
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| Q |
201 |
agtcaggtttcgcaaactttttctg |
225 |
Q |
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| T |
37819893 |
agtcaggtttcgcaaactttttctg |
37819869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 37823629 - 37823579
Alignment:
| Q |
25 |
accaaagccaaagatttaacatagaggatttgttgcaaggatcccctgaaa |
75 |
Q |
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| T |
37823629 |
accaaggccaaagatttaacatataggttttgttgcaaggatcccctgaaa |
37823579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 37823516 - 37823469
Alignment:
| Q |
142 |
gtgtaatagaaattttacccaaataatccacaaagaaaagcttggaata |
190 |
Q |
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| T |
37823516 |
gtgtattagaaattt-acccaaataacccacaaagaaaagcttggaata |
37823469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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