View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5413_low_73 (Length: 238)

Name: NF5413_low_73
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5413_low_73
NF5413_low_73
[»] chr8 (16 HSPs)
chr8 (1-224)||(4689050-4689273)
chr8 (2-224)||(4726218-4726442)
chr8 (51-220)||(4745784-4745953)
chr8 (123-224)||(4715071-4715172)
chr8 (50-215)||(4924864-4925029)
chr8 (20-224)||(4736774-4736979)
chr8 (54-220)||(10446798-10446964)
chr8 (45-220)||(4889829-4890004)
chr8 (47-171)||(10452495-10452619)
chr8 (81-220)||(4681423-4681562)
chr8 (51-220)||(21439303-21439472)
chr8 (47-171)||(4776433-4776557)
chr8 (47-220)||(4913367-4913540)
chr8 (81-170)||(4996410-4996499)
chr8 (127-223)||(4875137-4875233)
chr8 (81-191)||(4703739-4703849)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4689273 - 4689050
Alignment:
Q  1 aatgcagttgaaaatagatcaagaggattcaatatttatggagagaaggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4689273 aatgcagttgaaaatagatcaagaggattcaatatttatggagagaaggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttca 4689174  T
Q  101 gtttctgattgtgggaagtccattactttataaacctcataggcattgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagatacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4689173 gtttctgattgtgggaagtccattactttataaacctcataggcattgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagatacc 4689074  T
Q  201 ttgcggctccagtcaaaggttttg 224  Q
    ||||||||||||||||||||||||    
T  4689073 ttgcggctccagtcaaaggttttg 4689050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 4726442 - 4726218
Alignment:
Q  2 atgcagttgaaaatagatcaa-gaggattcaatatttatggag--agaaggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgtt 98  Q
    ||||||||||||||| ||||| |||||| | ||||||| |||   || |||||||||||||||||| ||||| |||||| | ||||||||||| | ||||    
T  4726442 atgcagttgaaaatatatcaaagaggatactatatttaaggacgaaggaggtagtatgtttttcaattaaac-aaagggctagcttaccatcaccctgtt 4726344  T
Q  99 cagtttctgattgtgggaagtccattactttataaacctcataggcattgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagata 198  Q
     ||||||||| || | ||||||  ||| |||||| |||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||| | ||||    
T  4726343 gagtttctgaatgcgagaagtcttttagtttatatacctcaaaggcattgaggattggtggaagggttgacttttctgtcttaaaaagggaaacttgata 4726244  T
Q  199 ccttgcggctccagtcaaaggttttg 224  Q
    ||||| ||||||||||||||||||||    
T  4726243 ccttgtggctccagtcaaaggttttg 4726218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 4745953 - 4745784
Alignment:
Q  51 agtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattgag 150  Q
    ||||||||||||||||||||||| ||| | ||||| |||||||||||| ||||||||||| || ||||||  |||  | |||||||||||||||||||||    
T  4745953 agtatgtttttcaaataaactaatgggctagcttatcatcatcttgttgagtttctgattttgagaagtctcttagctaataaacctcataggcattgag 4745854  T
Q  151 gattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggt 220  Q
    ||||||||||||||||||||| || |||||  | ||||||| | ||||||||  ||||||||||||||||    
T  4745853 gattggtggaagggttgaattctctgtcttatagagggaaatttgataccttttggctccagtcaaaggt 4745784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 4715172 - 4715071
Alignment:
Q  123 ttactttataaacctcataggcattgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggttt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||  ||||||||||||||||||||| ||||||||||||||||||    
T  4715172 ttactttataaacctcataggcattgaggattggtggaagggttgaattctctgtcttagaaagggaaaatagataccttgtggctccagtcaaaggttt 4715073  T
Q  223 tg 224  Q
    ||    
T  4715072 tg 4715071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 4924864 - 4925029
Alignment:
Q  50 tagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattga 149  Q
    ||||||||| || | |||||||| |||| | |||||||||||||||||| |||||||| ||||  ||| |   |||||||||||||||||||||||||||    
T  4924864 tagtatgttgttgagataaactagagggctagcttaccatcatcttgttgagtttctggttgtaagaattgttttactttataaacctcataggcattga 4924963  T
Q  150 ggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtca 215  Q
    |||| ||||||||||||||||| || ||||| | |||||||||| ||||||||  |||||||||||    
T  4924964 ggatgggtggaagggttgaattctctgtcttaataagggaaaattgataccttttggctccagtca 4925029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 4736979 - 4736774
Alignment:
Q  20 caagaggattcaatatttatgga--gagaaggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaa 117  Q
    ||||||||| | ||||||| |||  ||| |||||||||||||||||| ||||| |||||| | |||||||||||||||||| ||||||||||  || |||    
T  4736979 caagaggatactatatttaaggacggaggaggtagtatgtttttcaattaaac-aaagggctagcttaccatcatcttgttgagtttctgatattgagaa 4736881  T
Q  118 gtccattactttataaacctcataggcattgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaa 217  Q
    |||  ||  ||||||||||||| | ||||| ||||| ||||||||||||||||| ||  ||||  |||||||||   ||||||||| |||||||||||||    
T  4736880 gtctctttgtttataaacctcaaaagcattcaggatgggtggaagggttgaattatctttcttcgaaagggaaacatgataccttggggctccagtcaaa 4736781  T
Q  218 ggttttg 224  Q
    |||||||    
T  4736780 ggttttg 4736774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 10446964 - 10446798
Alignment:
Q  54 atgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattgaggat 153  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||  |||| ||||||  ||||||||||||  |||  |||||||| |||    
T  10446964 atgtttttcaaataaactaaagggcttgcttaccatcatcttgtttagtttctggctgtgagaagtcttttactttataaatttcaatggcattgacgat 10446865  T
Q  154 tggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggt 220  Q
    |||||||||||||||||| ||  |||| |||||||||| | |||| | || | ||||||| ||||||    
T  10446864 tggtggaagggttgaattctctatcttgaaaagggaaattggatagcgtgtgcctccagttaaaggt 10446798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 45 - 220
Target Start/End: Original strand, 4889829 - 4890004
Alignment:
Q  45 gaaggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggc 144  Q
    |||| ||||||| |||||| ||||||||||||  |  |||||||||||| || | |||||||||||||| ||||||  |||||||||||| |||| ||||    
T  4889829 gaagatagtatggttttcatataaactaaaggactaacttaccatcatcctgatgagtttctgattgtgagaagtcttttactttataaatctcaaaggc 4889928  T
Q  145 attgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggt 220  Q
    ||||||||||||||||||||||||||| || |||||    ||||||| | |||| |||  ||||||||||||||||    
T  4889929 attgaggattggtggaagggttgaattctctgtcttagtcagggaaatttgatagcttttggctccagtcaaaggt 4890004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 10452619 - 10452495
Alignment:
Q  47 aggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcat 146  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||||||||| ||||||| || || ||||||  ||||||||||||  | |  |||||    
T  10452619 aggtaatatgtttttcaaataaactaaagggcttacttaccatcatcttgttctgtttctggttttgagaagtcttttactttataaattttaatggcat 10452520  T
Q  147 tgaggattggtggaagggttgaatt 171  Q
    ||||||| |||||||||||||||||    
T  10452519 tgaggatgggtggaagggttgaatt 10452495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 4681562 - 4681423
Alignment:
Q  81 gcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattgaggattggtggaagggttgaattttccgtctt 180  Q
    ||||||||||||| |||| |||||||||||||| ||| |   |||||||||||||||||  |||||| ||||| ||||||||||||||||| || |||||    
T  4681562 gcttaccatcatcctgttgagtttctgattgtgagaaattttttactttataaacctcaacggcattcaggatgggtggaagggttgaattatctgtctt 4681463  T
Q  181 taaaagggaaaatagataccttgcggctccagtcaaaggt 220  Q
      |||||| ||||| |||| |||  |||||||||||||||    
T  4681462 ggaaagggtaaatatatactttgtcgctccagtcaaaggt 4681423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 21439303 - 21439472
Alignment:
Q  51 agtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattgag 150  Q
    ||||||||||||||||||||||||| |   ||||||||||||| |||| |||||||||||||| |||| |  || |  |||||| |||| | ||||| ||    
T  21439303 agtatgtttttcaaataaactaaagagccagcttaccatcatcctgttgagtttctgattgtgagaagacttttcccatataaatctcaaatgcatttag 21439402  T
Q  151 gattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggt 220  Q
    ||| ||||||||||||||||| |  ||| |  |||| |||| | ||||||||| ||||||||||||||||    
T  21439403 gatgggtggaagggttgaattctgtgtcctagaaagagaaatttgataccttgtggctccagtcaaaggt 21439472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 4776433 - 4776557
Alignment:
Q  47 aggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcat 146  Q
    |||||||||||||||||||||||||||||   | ||||||||||||| |||| ||||||| |||||| ||||||  || |  |||||| |||| ||||||    
T  4776433 aggtagtatgtttttcaaataaactaaagtcctagcttaccatcatcctgttgagtttctaattgtgagaagtcttttgccatataaatctcaaaggcat 4776532  T
Q  147 tgaggattggtggaagggttgaatt 171  Q
    | ||||| |||||||||||||||||    
T  4776533 ttaggatgggtggaagggttgaatt 4776557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 4913367 - 4913540
Alignment:
Q  47 aggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcat 146  Q
    |||||| |||||||||| |||||||||||||   ||||||||||||| |||| |||||||||||||| ||||||  ||    | |||| |||| ||||||    
T  4913367 aggtagaatgtttttcagataaactaaagggccagcttaccatcatcctgttgagtttctgattgtgagaagtcttttgacatgtaaatctcaaaggcat 4913466  T
Q  147 tgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggt 220  Q
    | ||||| ||||||||||||||||| |  |||||  |||| |||| | ||||||||| |||||||  |||||||    
T  4913467 ttaggatgggtggaagggttgaattctttgtcttggaaagagaaatttgataccttgtggctccaaccaaaggt 4913540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 4996499 - 4996410
Alignment:
Q  81 gcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattgaggattggtggaagggttgaat 170  Q
    |||||||||||||  | |||||||||||||||| |||||   ||||||||||||  ||| ||||||||||||||||||||||||||||||    
T  4996499 gcttaccatcatcccgatcagtttctgattgtgagaagttttttactttataaatttcaaaggcattgaggattggtggaagggttgaat 4996410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 4875137 - 4875233
Alignment:
Q  127 tttataaacctcataggcattgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggtttt 223  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||  || ||| | |||||||||| |  |||||||   ||||||||||||||||||    
T  4875137 tttataaaactcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggtttt 4875233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 4703849 - 4703739
Alignment:
Q  81 gcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattgaggattggtggaagggttgaattttccgtctt 180  Q
    ||||||||||||| || | ||||||||| |||| ||||||  |||||||||||||||||   |||||    || ||||||||||||||||| || |||||    
T  4703849 gcttaccatcatcctgatgagtttctgactgtgagaagtcttttactttataaacctcaatagcattagctatgggtggaagggttgaattatctgtctt 4703750  T
Q  181 taaaagggaaa 191  Q
     || |||||||    
T  4703749 aaagagggaaa 4703739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University