View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5413_low_76 (Length: 237)

Name: NF5413_low_76
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5413_low_76
NF5413_low_76
[»] chr1 (2 HSPs)
chr1 (8-237)||(33692830-33693059)
chr1 (198-234)||(39289313-39289349)
[»] chr7 (2 HSPs)
chr7 (102-203)||(15050177-15050279)
chr7 (115-230)||(38123720-38123836)
[»] chr4 (4 HSPs)
chr4 (200-237)||(8330117-8330154)
chr4 (197-237)||(10185192-10185232)
chr4 (198-237)||(2206517-2206556)
chr4 (198-234)||(11271587-11271623)
[»] chr2 (4 HSPs)
chr2 (198-237)||(42982544-42982582)
chr2 (142-236)||(43501068-43501162)
chr2 (195-234)||(44810371-44810410)
chr2 (198-234)||(37402283-37402319)
[»] chr6 (1 HSPs)
chr6 (199-237)||(31305894-31305932)
[»] chr5 (6 HSPs)
chr5 (198-232)||(11132837-11132871)
chr5 (198-234)||(7667609-7667645)
chr5 (198-234)||(10957460-10957496)
chr5 (128-183)||(29922805-29922861)
chr5 (198-234)||(42439667-42439703)
chr5 (193-237)||(42724401-42724445)
[»] scaffold0283 (1 HSPs)
scaffold0283 (193-237)||(18375-18419)
[»] chr3 (1 HSPs)
chr3 (193-233)||(49634090-49634130)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 33692830 - 33693059
Alignment:
Q  8 gatcatataaactgaggaatgtggaagctcatcctcccagataacattatcttacttcaatacttcattataacaaattctgtagagtaattttagtact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33692830 gatcatataaactgaggaatgtggaagctcatcctcccagataacattatcttacttcaatacttcattataacaaattctgtagagtaattttagtact 33692929  T
Q  108 aagcatatgtttggatccacttttgaggagtccaaattgatcctggaagtgtagaattgatttgacatatttggttactctcttgttgagttgattctaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33692930 aagcatatgtttggatccacttttgaggagtccaaattgatcctggaagtgtagaattgatttgacatatttggttactctcttgttgagttgattctaa 33693029  T
Q  208 cttgaagctagaaattgtagcttttgattc 237  Q
    ||||||||||||||||||||||||||||||    
T  33693030 cttgaagctagaaattgtagcttttgattc 33693059  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 39289349 - 39289313
Alignment:
Q  198 ttgattctaacttgaagctagaaattgtagcttttga 234  Q
    ||||||||||||||||||||||| || ||||||||||    
T  39289349 ttgattctaacttgaagctagaacttttagcttttga 39289313  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 15050177 - 15050279
Alignment:
Q  102 agtactaagcatatgtttggatccacttttgaggagtccaaattgatcctggaagtgtagaattga-tttgacatatttggttactctcttgttgagttg 200  Q
    |||||||||  ||||||||| |||||||| |||||| | |||||||| || |||||| |||||||| |||||| | ||||||||||||| ||| || |||    
T  15050177 agtactaagtgtatgtttggttccactttggaggagccaaaattgattctagaagtgaagaattgattttgacctgtttggttactctcatgtagaattg 15050276  T
Q  201 att 203  Q
    |||    
T  15050277 att 15050279  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 38123836 - 38123720
Alignment:
Q  115 tgtttggatccacttttg-aggagtccaaattgatcctggaagtgtagaattgatttga-catatttggttactctcttgttgagttgattctaacttga 212  Q
    ||||||| |||||||||| ||||| | |||||||| || ||  |||||||||||||| | ||| ||||||| || |   || || ||||||||| |||||    
T  38123836 tgtttggttccacttttggaggagccaaaattgattctagagatgtagaattgattttaacatgtttggttcctataaagtagaattgattcta-cttga 38123738  T
Q  213 agctagaaattgtagctt 230  Q
    ||||||||||||||||||    
T  38123737 agctagaaattgtagctt 38123720  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 8330117 - 8330154
Alignment:
Q  200 gattctaacttgaagctagaaattgtagcttttgattc 237  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  8330117 gattctaacttgaagctagaaattggagcttttgattc 8330154  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 10185192 - 10185232
Alignment:
Q  197 gttgattctaacttgaagctagaaattgtagcttttgattc 237  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  10185192 gttgattctaacttgaaggtagaaattgaagcttttgattc 10185232  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 2206517 - 2206556
Alignment:
Q  198 ttgattctaacttgaagctagaaattgtagcttttgattc 237  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  2206517 ttgattctaacttgaagctaaacattgtagcttttgattc 2206556  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 11271623 - 11271587
Alignment:
Q  198 ttgattctaacttgaagctagaaattgtagcttttga 234  Q
    ||||||||||||||||||||| | |||||||||||||    
T  11271623 ttgattctaacttgaagctaggatttgtagcttttga 11271587  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 42982544 - 42982582
Alignment:
Q  198 ttgattctaacttgaagctagaaattgtagcttttgattc 237  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  42982544 ttgattcta-cttgaagctagaaattgtagcttttgattc 42982582  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 43501068 - 43501162
Alignment:
Q  142 aattgatcctggaagtgtagaattgatt-tgacatatttggttactctcttgttgagttgattctaacttgaagctagaaattgtagcttttgatt 236  Q
    |||||||||||||  ||||||||||||| |||||| ||||||| || ||  || || |||||||| ||||||| |||| | |||||||||||||||    
T  43501068 aattgatcctggagctgtagaattgattctgacatgtttggttgctttcaagtagaattgattct-acttgaaactaggatttgtagcttttgatt 43501162  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 44810371 - 44810410
Alignment:
Q  195 gagttgattctaacttgaagctagaaattgtagcttttga 234  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  44810371 gagttgattctaacttgaagctaggatttgtagcttttga 44810410  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 37402319 - 37402283
Alignment:
Q  198 ttgattctaacttgaagctagaaattgtagcttttga 234  Q
    |||| |||||||||||||||||| |||||||||||||    
T  37402319 ttgactctaacttgaagctagaatttgtagcttttga 37402283  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 31305932 - 31305894
Alignment:
Q  199 tgattctaacttgaagctagaaattgtagcttttgattc 237  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  31305932 tgattctaacttgaagctaaaaattggagcttttgattc 31305894  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 11132871 - 11132837
Alignment:
Q  198 ttgattctaacttgaagctagaaattgtagctttt 232  Q
    |||||||||||||||||||| ||||||||||||||    
T  11132871 ttgattctaacttgaagctacaaattgtagctttt 11132837  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 7667609 - 7667645
Alignment:
Q  198 ttgattctaacttgaagctagaaattgtagcttttga 234  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  7667609 ttgattctaacttgaagctagaatttggagcttttga 7667645  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 10957460 - 10957496
Alignment:
Q  198 ttgattctaacttgaagctagaaattgtagcttttga 234  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  10957460 ttgattctaacctgaagctagaaattgtagcctttga 10957496  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 29922805 - 29922861
Alignment:
Q  128 ttttgaggagtccaaattgatcctggaagtgtagaattga-tttgacatatttggtt 183  Q
    |||||||||||| |||||||| || | ||||||||||||| |||||||| |||||||    
T  29922805 ttttgaggagtcaaaattgattctagtagtgtagaattgattttgacatgtttggtt 29922861  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 42439703 - 42439667
Alignment:
Q  198 ttgattctaacttgaagctagaaattgtagcttttga 234  Q
    |||||||||||||||||||||||  ||||||||||||    
T  42439703 ttgattctaacttgaagctagaatctgtagcttttga 42439667  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 42724401 - 42724445
Alignment:
Q  193 ttgagttgattctaacttgaagctagaaattgtagcttttgattc 237  Q
    |||| ||||||||||||||||||||||||||| || |||| ||||    
T  42724401 ttgaattgattctaacttgaagctagaaattgaagttttttattc 42724445  T

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Target: scaffold0283 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 18375 - 18419
Alignment:
Q  193 ttgagttgattctaacttgaagctagaaattgtagcttttgattc 237  Q
    |||| ||||||||||||||||||||||||||| || |||| ||||    
T  18375 ttgaattgattctaacttgaagctagaaattgaagttttttattc 18419  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 49634130 - 49634090
Alignment:
Q  193 ttgagttgattctaacttgaagctagaaattgtagcttttg 233  Q
    |||| ||||||||||||||||||||| | ||||||||||||    
T  49634130 ttgaattgattctaacttgaagctaggatttgtagcttttg 49634090  T

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