View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_78 (Length: 229)
Name: NF5413_low_78
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 7349409 - 7349333
Alignment:
| Q |
39 |
acatcatcgccatcctcaaaaggtctgaaaccctaaccct------aaccggacaactccctcccttctcccactcc |
109 |
Q |
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| T |
7349409 |
acatcatcgccatcctcaaaaggtccgaaaccctaaccctaaccctaaccggccaactccctcccttctcgcactcc |
7349333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 7349308 - 7349271
Alignment:
| Q |
177 |
gtggggttgagatagattgttcaaaaggtggttgttgt |
214 |
Q |
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| T |
7349308 |
gtggggttgagatagattgttcaaaaggtggttgttgt |
7349271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 163
Target Start/End: Complemental strand, 7349336 - 7349306
Alignment:
| Q |
133 |
ctccttggggacgctggtgaatgggaaggtg |
163 |
Q |
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| T |
7349336 |
ctccttggggacgctggtgaatgggaaggtg |
7349306 |
T |
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