View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5413_low_84 (Length: 206)

Name: NF5413_low_84
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5413_low_84
NF5413_low_84
[»] scaffold0386 (2 HSPs)
scaffold0386 (18-105)||(1147-1234)
scaffold0386 (157-189)||(707-739)
[»] chr4 (3 HSPs)
chr4 (18-105)||(33878719-33878806)
chr4 (150-189)||(33878635-33878674)
chr4 (161-189)||(33879209-33879237)
[»] chr8 (2 HSPs)
chr8 (18-105)||(38460526-38460613)
chr8 (157-189)||(38460882-38460914)
[»] chr5 (6 HSPs)
chr5 (18-105)||(13869339-13869426)
chr5 (18-105)||(27640973-27641060)
chr5 (150-189)||(13869251-13869290)
chr5 (150-189)||(27640886-27640925)
chr5 (157-189)||(13869827-13869859)
chr5 (157-189)||(27641431-27641463)
[»] chr7 (1 HSPs)
chr7 (18-105)||(29735574-29735661)
[»] chr3 (3 HSPs)
chr3 (18-105)||(49851282-49851369)
chr3 (150-189)||(49851417-49851456)
chr3 (157-189)||(49850850-49850882)


Alignment Details
Target: scaffold0386 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 1147 - 1234
Alignment:
Q  18 accatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccacaggtttaagcaaagagaagagaaagaaaactc 105  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1147 accatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 1234  T

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Target: scaffold0386; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 739 - 707
Alignment:
Q  157 tcatgatttcattggatgtttgtaagtgccaca 189  Q
    |||||||||||||||||||||||||||||||||    
T  739 tcatgatttcattggatgtttgtaagtgccaca 707  T

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Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 33878806 - 33878719
Alignment:
Q  18 accatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccacaggtttaagcaaagagaagagaaagaaaactc 105  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33878806 accatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 33878719  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 33878674 - 33878635
Alignment:
Q  150 tgacctatcatgatttcattggatgtttgtaagtgccaca 189  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  33878674 tgacctgtcatgatttcattggatgtttgtaagtgccaca 33878635  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 33879209 - 33879237
Alignment:
Q  161 gatttcattggatgtttgtaagtgccaca 189  Q
    |||||||||||||||||||||||||||||    
T  33879209 gatttcattggatgtttgtaagtgccaca 33879237  T

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Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 38460613 - 38460526
Alignment:
Q  18 accatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccacaggtttaagcaaagagaagagaaagaaaactc 105  Q
    |||||||||||||||||||||||||||||  |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  38460613 accatcttcacaatttaaacaacaagagatatttggagtttctagacttattccacaggtttaagcaaagagaagagaaagaaaactc 38460526  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 38460882 - 38460914
Alignment:
Q  157 tcatgatttcattggatgtttgtaagtgccaca 189  Q
    |||||||||||||||||||||||||||||||||    
T  38460882 tcatgatttcattggatgtttgtaagtgccaca 38460914  T

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Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 13869426 - 13869339
Alignment:
Q  18 accatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccacaggtttaagcaaagagaagagaaagaaaactc 105  Q
    |||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  13869426 accatcttcataatttaaacaacaagagaagtttggcgtttctagaattattccaccggtttaagcaaagagaagagaaagaaaactc 13869339  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 27641060 - 27640973
Alignment:
Q  18 accatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccacaggtttaagcaaagagaagagaaagaaaactc 105  Q
    |||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||  ||||||||||||||||||||||||||||||    
T  27641060 accatcttcataatttaaacaacaagagaagtttggcgtttctagaattattccaccagtttaagcaaagagaagagaaagaaaactc 27640973  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 13869290 - 13869251
Alignment:
Q  150 tgacctatcatgatttcattggatgtttgtaagtgccaca 189  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  13869290 tgacctgtcatgatttcattggatgtttgtaagtgccaca 13869251  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 27640925 - 27640886
Alignment:
Q  150 tgacctatcatgatttcattggatgtttgtaagtgccaca 189  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  27640925 tgacctgtcatgatttcattggatgtttgtaagtgccaca 27640886  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 13869827 - 13869859
Alignment:
Q  157 tcatgatttcattggatgtttgtaagtgccaca 189  Q
    |||||||||||||| ||||||||||||||||||    
T  13869827 tcatgatttcattgaatgtttgtaagtgccaca 13869859  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 27641431 - 27641463
Alignment:
Q  157 tcatgatttcattggatgtttgtaagtgccaca 189  Q
    |||||||||||||| ||||||||||||||||||    
T  27641431 tcatgatttcattgaatgtttgtaagtgccaca 27641463  T

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Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 29735574 - 29735661
Alignment:
Q  18 accatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccacaggtttaagcaaagagaagagaaagaaaactc 105  Q
    |||||||||||||||||||||||||||| | |||||  |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29735574 accatcttcacaatttaaacaacaagaggaatttggcatttttagaattattccaccggtttaagcaaagagaagagaaagaaaactc 29735661  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 49851282 - 49851369
Alignment:
Q  18 accatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccacaggtttaagcaaagagaagagaaagaaaactc 105  Q
    |||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||  |||||||||||||||| |||||||||||||    
T  49851282 accatcttcacaatttaaacaacaagggaagtttggcgtttctagaattattccaccagtttaagcaaagagaaaagaaagaaaactc 49851369  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 49851417 - 49851456
Alignment:
Q  150 tgacctatcatgatttcattggatgtttgtaagtgccaca 189  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  49851417 tgacctgttatgatttcattggatgtttgtaagtgccaca 49851456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 49850882 - 49850850
Alignment:
Q  157 tcatgatttcattggatgtttgtaagtgccaca 189  Q
    |||||||||||||| ||||||||||||||||||    
T  49850882 tcatgatttcattgaatgtttgtaagtgccaca 49850850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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