View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5413_low_9 (Length: 488)
Name: NF5413_low_9
Description: NF5413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5413_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Complemental strand, 45210219 - 45209765
Alignment:
| Q |
19 |
agatccgccaaatgcagttgcagcgtttcaagtcagtgtcggtagagctggcaataacaaaactgccatcatagcgccgcagaatttcactttgaaaaca |
118 |
Q |
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| T |
45210219 |
agatccgccaaatgcagttgcagcgtttcaagtcagtgtcggtagagctggcaataacaaaactgccatcatagcgccgcagaatttcactttgaaaaca |
45210120 |
T |
|
| Q |
119 |
ccaggaccaggttatacatgcaaccaaccaaaaattgcggaacttactgaattcacatcaccgaacgaaaggagagtgactgaagcaatttgtaagtata |
218 |
Q |
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| T |
45210119 |
ccaggaccaggttatacatgcaaccaaccaaaaattgcggaacttactgaattcacatcaccgaacgaaaggagagtgactgaagcaatttgtaagtata |
45210020 |
T |
|
| Q |
219 |
ttttgtaaacctacgactaccaattctcctaagttgtcgtataattatcagctctgtttgaataaataacttaatttagcacttaattatagcatagact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45210019 |
ttttgtaaacctacgactaccaattctcctaagttgtcgtataattatcagctctgtttgaataaataacttaatttagcac----ttatagcatagact |
45209924 |
T |
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| Q |
319 |
atttctatgacaacacatattatgatttacttataccttaactaacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209923 |
atttctatgacaacacatattatgatttacttataccttaattaacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatt |
45209824 |
T |
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| Q |
419 |
tctagttcagaaacctccaaattgctgcgtttccctctcatctttctatagcgagaata |
477 |
Q |
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| T |
45209823 |
tctagttcagaaacctccaaattgctgcgtttccctctcatctttctatagcgagaata |
45209765 |
T |
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Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 379 - 468
Target Start/End: Original strand, 5007817 - 5007906
Alignment:
| Q |
379 |
ttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatctttctata |
468 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||| | ||||||| |||| | |||||| || ||||||||||||||||||| |
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| T |
5007817 |
ttgcagtgacatggaatgttacatgcacatattcacaatttctggctcagaaaactccgacttgctgtgtctccctctcatctttctata |
5007906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 361 - 466
Target Start/End: Original strand, 5550497 - 5550602
Alignment:
| Q |
361 |
taacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatc |
460 |
Q |
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| T |
5550497 |
taacataactctgattgtttgcagtgacatggaatgtgacatgcacatattcacaatttttagctcaacaaactccaacttgttgtgttgccctctcatc |
5550596 |
T |
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| Q |
461 |
tttcta |
466 |
Q |
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||||| |
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| T |
5550597 |
attcta |
5550602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 335 - 468
Target Start/End: Complemental strand, 5540344 - 5540216
Alignment:
| Q |
335 |
atattatgatttacttataccttaactaacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacct |
434 |
Q |
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||||||||||||||| | |||||||| ||||||||||||| || ||||||||||||| |||| ||||||||||||||||||||||| || |||| || |
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| T |
5540344 |
atattatgatttactaagaccttaac----attactctgatttttt-cagtgacatggaatgtgagatgcacatattcacaatttctagctccgaaaact |
5540250 |
T |
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| Q |
435 |
ccaaattgctgcgtttccctctcatctttctata |
468 |
Q |
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|||| ||| || || | |||||||| ||||||| |
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| T |
5540249 |
ccaacttgttgtgtcgctctctcatcattctata |
5540216 |
T |
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