View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5414_low_1 (Length: 213)
Name: NF5414_low_1
Description: NF5414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5414_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 55300373 - 55300549
Alignment:
| Q |
19 |
aatatctcttcatcactgcgacctatcctcgtttcatcatccccccacagtagtccttactacaaaggtcttaccgattactctcttgtcattgatgcct |
118 |
Q |
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| T |
55300373 |
aatatctcttcatcactgcgacctatcctcctttcatcatccccccacagtagtccttactacaaaggtcttaccgattattctcttgtcattgatgcct |
55300472 |
T |
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| Q |
119 |
cttgggccactcctcatccccacccccatcacaactcatccctttcttgttatcacgactcaagtccatactatagg |
195 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55300473 |
cttgggccactcctcatccccacccccatcataactcatccctttcttgttatcacgactcaagtccatactatagg |
55300549 |
T |
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