View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5415_low_1 (Length: 327)

Name: NF5415_low_1
Description: NF5415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5415_low_1
NF5415_low_1
[»] chr4 (11 HSPs)
chr4 (1-311)||(6995225-6995531)
chr4 (6-226)||(7014682-7014901)
chr4 (6-225)||(7040753-7040970)
chr4 (6-195)||(7028306-7028491)
chr4 (7-195)||(7056754-7056938)
chr4 (90-188)||(7047961-7048059)
chr4 (90-195)||(7005044-7005149)
chr4 (90-207)||(7021673-7021790)
chr4 (263-311)||(7040968-7041016)
chr4 (263-311)||(7048092-7048139)
chr4 (266-311)||(7021811-7021856)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 6995225 - 6995531
Alignment:
Q  1 ctaaactgccaagtaagttttttcataacttacattgattcacacacaatttttgtccataaaatgtttcattattgtgatgtttctcgttttcattatt 100  Q
    ||||||||||||||||||||| ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6995225 ctaaactgccaagtaagtttt-tcataacttatctagattcacacacaatttttgtccataaaatgtttcattattgtgatgtttctcgttttcattatt 6995323  T
Q  101 gttgtagttttatagtttttacctgagcacaaaatgggctaacgatgagtgtgttcgcaaggcactgcatattcgagaggtttgatatgataaacttaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6995324 gttgtagttttatagtttttacctgagcacaaaatgggctaacgatgagtgtgttcgcaaggcactgcatattcgagaggtttgatatgacaaacttaca 6995423  T
Q  201 aactcatcatatctagtgatcttcttatgttgaatcatcataattggaaacagatacttaagtctatgttacattacaaatacttttgaatttgagttga 300  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6995424 aactcatcatatctagtgatcttcttatgttga---atcataattggaaacagatacttaagtctatgttacattacaaatacttttgaatttgagttga 6995520  T
Q  301 atgcatcaaag 311  Q
    |||||||||||    
T  6995521 atgcatcaaag 6995531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 7014682 - 7014901
Alignment:
Q  6 ctgccaagtaagttttttca-taacttacattgattcacacacaatttttgtccataaaatgtttcattattgtgatgtttctcgttttcattattgttg 104  Q
    ||||||||||| |||||||| ||||||   | || | |||||||||| | || ||||||||||||||  | | ||||||| ||| ||||||||||| |||    
T  7014682 ctgccaagtaatttttttcaataacttgtctggactaacacacaattctcgtgcataaaatgtttca--aatttgatgttcctcattttcattatttttg 7014779  T
Q  105 tagttttatagtttttacctgagcacaaaatgggctaacgatgagtgtgttcgcaaggcactgcatattcgagaggtttgatatgataaacttacaaact 204  Q
    ||| |||||||||||||||| | |||||| |||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||||| || ||| |    
T  7014780 tagatttatagtttttacctcaccacaaagtgggctaatgaagagagtgttcgcaaggcgctgcatattcgagaggtttgatatgataaacctataaaat 7014879  T
Q  205 catcatatctagtgatcttctt 226  Q
    ||| || ||| ||||| |||||    
T  7014880 cataatgtcttgtgattttctt 7014901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 7040753 - 7040970
Alignment:
Q  6 ctgccaagtaagttttttcataacttacattgattcacacacaatttttgtccataaaatgtttcattattgtgatgtttctcgttttcattattgttgt 105  Q
    ||||||||||| ||||| ||||||||     ||||| |||||||| ||| | ||||||||||||||  | | ||||| | ||| ||||||||||||||||    
T  7040753 ctgccaagtaattttttacataacttgtcaagattcgcacacaatgtttattcataaaatgtttca--aatctgatgctcctcattttcattattgttgt 7040850  T
Q  106 agttttatagtttttacctgagcacaaaatgggctaacgatgagtgtgttcgcaaggcactgcatattcgagaggtttgatatgataaacttacaaactc 205  Q
    || ||||| ||||||||||    || ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||| || ||| ||    
T  7040851 agatttatggtttttacctcgctactaaatgggctaacgatgagaatgttcgcaaggcactgcatattcgagaggtttgatataataaacctataaattc 7040950  T
Q  206 atcatatctagtgatcttct 225  Q
    || | ||| |||||| ||||    
T  7040951 attacatcgagtgattttct 7040970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 195
Target Start/End: Original strand, 7028306 - 7028491
Alignment:
Q  6 ctgccaagtaagttttttcataacttacattgattcacacacaatttttgtccataaaatgtttcattattgtgatgtttctcgttttcattattgttgt 105  Q
    |||||| |||| ||| |||||| ||||  |||| ||  |||||||||||||||||||  ||||| |  | | |||||||  || ||||||||| ||||||    
T  7028306 ctgccatgtaattttcttcatagcttatcttgactcggacacaatttttgtccataa--tgtttta--aatttgatgttattcattttcattaatgttgt 7028401  T
Q  106 agttttatagtttttacctgagcacaaaatgggctaacgatgagtgtgttcgcaaggcactgcatattcgagaggtttgatatgataaac 195  Q
    || ||||| ||||||||||   ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  7028402 agatttatcgtttttacctcgccactaaatgggctaacgatgagagtgttcgcaaggcactgcatattcgagaggtttgatataataaac 7028491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 7056754 - 7056938
Alignment:
Q  7 tgccaagtaagttttttcataacttacattgattcacacacaatttttgtccataaaatgtttcattattgtgatgtttctcgttttcattattgttgta 106  Q
    |||| ||||| |||||||||| ||||  | |||||  |||||||||||||||||||  |||||||  | | |||||||  || |||||||||||||||||    
T  7056754 tgccgagtaatttttttcatagcttatctagattctgacacaatttttgtccataa--tgtttca--aatttgatgttattcattttcattattgttgta 7056849  T
Q  107 gttttatagtttttacctgagcacaaaatgggctaacgatgagtgtgttcgcaaggcactgcatattcgagaggtttgatatgataaac 195  Q
    |  |||| ||||||||||   ||| ||||||  || ||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  7056850 gaattatggtttttacctcgccactaaatggtttagcgatgagagtgttcgcaaggcactgcatattcgagaggtttgatattataaac 7056938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 7047961 - 7048059
Alignment:
Q  90 ttttcattattgttgtagttttatagtttttacctgagcacaaaatgggctaacgatgagtgtgttcgcaaggcactgcatattcgagaggtttgatat 188  Q
    ||||||||||||||||||  |||  ||||||||||   ||| ||||||  || ||||||| ||||||||||||||||||||||||||||||||||||||    
T  7047961 ttttcattattgttgtaggattacggtttttacctcgccactaaatggattagcgatgagagtgttcgcaaggcactgcatattcgagaggtttgatat 7048059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 7005044 - 7005149
Alignment:
Q  90 ttttcattattgttgtagttttatagtttttacctgagcacaaaatgggctaacgatgagtgtgttcgcaaggcactgcatattcgagaggtttgatatg 189  Q
    |||||||||||||||||| ||||| |||  |||||   ||| ||||||  || | ||||| ||||||||||||||||||||||||||||||||||||||     
T  7005044 ttttcattattgttgtagatttatggttactacctcgccactaaatggattagcaatgagagtgttcgcaaggcactgcatattcgagaggtttgatatt 7005143  T
Q  190 ataaac 195  Q
    ||||||    
T  7005144 ataaac 7005149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 7021673 - 7021790
Alignment:
Q  90 ttttcattattgttgtagttttatagtttttacctgagcacaaaatgggctaacgatgagtgtgttcgcaaggcactgcatattcgagaggtttgatatg 189  Q
    |||||||||||||||||| ||||| | ||||||||     | | |||| ||||| ||||| |||||||| |||| |||||||||||||||||||||| ||    
T  7021673 ttttcattattgttgtagatttatggcttttacctctctgctacatggtctaacaatgagagtgttcgccaggcgctgcatattcgagaggtttgatgtg 7021772  T
Q  190 ataaacttacaaactcat 207  Q
    |||||  || ||||||||    
T  7021773 ataaatctataaactcat 7021790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 7040968 - 7041016
Alignment:
Q  263 tctatgttacattacaaatacttttgaatttgagttgaatgcatcaaag 311  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  7040968 tctatgttaaattacaaatacttttgagtttgagttgaatgcatcaaag 7041016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 7048092 - 7048139
Alignment:
Q  263 tctatgttacattacaaatacttttgaatttgagttgaatgcatcaaag 311  Q
    ||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  7048092 tctatgttacattacaaatac-tttaaatttgagttaaatgcatcaaag 7048139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 7021811 - 7021856
Alignment:
Q  266 atgttacattacaaatacttttgaatttgagttgaatgcatcaaag 311  Q
    |||||||| |||||||| ||||||||||||||| |||| |||||||    
T  7021811 atgttacactacaaatagttttgaatttgagtttaatggatcaaag 7021856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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