View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5416-Insertion-1 (Length: 1125)
Name: NF5416-Insertion-1
Description: NF5416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5416-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 906; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 906; E-Value: 0
Query Start/End: Original strand, 7 - 1031
Target Start/End: Original strand, 37557259 - 37558298
Alignment:
| Q |
7 |
acaattaacggaacttattgaccacaattttcaggtgatcaaatatacacgtagttgaacacctgaaaattatggttaacaacgtcc------------- |
93 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37557259 |
acaattaacggaacttattgaccacaattttcaggtgatcaaatatacacgtagttgaacacctgaaaattatggttaacaacgtccaatttgtggttga |
37557358 |
T |
|
| Q |
94 |
-gaagttatcttaggggttaatgattttcaatacttaccgactaccaacgtaattaatcacctatttgaactgtgttaaccacttaaaagttgtcgcgaa |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37557359 |
cgaagttatcttaggggttaatgattttcaatacttaccgtctatcaacgtaattaatcacctatttgaactgtgttaaccacttaaaagttgtcgcgaa |
37557458 |
T |
|
| Q |
193 |
agtagcctaagtacggtcgtnnnnnnntcatttctttcaatatatggtaaattagcaattcaatattttcacgtcaataagctgaaagattcattaaaaa |
292 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37557459 |
agtagcctaagtacggtcgtaaaaaaatcatttctttcaatatatggtaaattagcaattcaatattttcacgtcaataagctgaaagattcattaaaaa |
37557558 |
T |
|
| Q |
293 |
cagattgctggaatccactggtggtgtaaaactgaaagccatgctgcagagcttacttcaggatattacgacttaagtgatagagatggataccgtcccg |
392 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
37557559 |
cagattgctggaatccactggtggtataaaactgaaagccatgctgcagagcttacttcaggatattacaacttaagtgatagagatggataccgtcccg |
37557658 |
T |
|
| Q |
393 |
tagcaaggatgtttgctcgacataatgctatcttgaatttcacatgtcttgagatgagaaattcggagcaaccagaagaagccaaaagttgtgcccagga |
492 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37557659 |
tagcaaggatgttcgctcgacataatgctatcttgaatttcacatgtcttgagatgagaaattcggagcaaccagaagaagccaaaagttgtgcccagga |
37557758 |
T |
|
| Q |
493 |
acttgttcagcaggtaattcattctggcttcaaatctaatctaatatgttctctgcaaaatcaagaagaatctgtgattgataaactccatgacatgttg |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
37557759 |
acttgttcagcaggtaattcattctggcttcaaatctaatctaatatgttctctgcaaaatcaaaaagaatctgtgattgataaactccatgacatgttg |
37557858 |
T |
|
| Q |
593 |
ctattcatgaaacaagttactcataatttagcctgttttatgttcatttctttataggtcttgagtgatggatggagagggaaccttgaagttgctgggg |
692 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
37557859 |
ctattcatgaaacaagttactcataatttagcctgttttatgttcatttctttataggtcttgagtgatggatggagagagaaccttgaagttgctgggg |
37557958 |
T |
|
| Q |
693 |
aaaatgcacttccaaggtatgacagtgaaggttacaaccaaatccttctaaatgcaaggccaaatggtgttaacaaaaagggccctccaaaactaaggat |
792 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37557959 |
aaaatgcacttccaaggtatgacagtgaaggttacaaccaaatccttctaaatgcaaggccaaatggtgttaacaaaaagggccctccaaaactaaggat |
37558058 |
T |
|
| Q |
793 |
gtatggagtcacatacctacgtttgacagaagaattattccagaaac-aaattttgatatattcaaaatctttgtgaaaaagatgcatgctaatcaggta |
891 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37558059 |
gtatggagtcacatacctacgtttgacagaagaattattccagaaacaaaattttgatatattcaaaatctttgtgaaaaagatgcatgctaatcaggta |
37558158 |
T |
|
| Q |
892 |
ttgtaaattaaaagacgttgatattttcatatttgtcggtgtttgaagcgaactaatcaaa-gtgaaattctgcaggatctttgtccagacccagaagaa |
990 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
37558159 |
ttgtaaattaaaagacgttgatattttcatatttgtcggtgtttgaagcgaactaatcaaaggtgaaattctgcaggatctttgtccagacccag-agaa |
37558257 |
T |
|
| Q |
991 |
atactatcattaccacggttcctatgg-aaggtcaaaaccaa |
1031 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||||| |
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| T |
37558258 |
atactatcatta-cacggttcctatggaaaggtcaaaaccaa |
37558298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 648 - 890
Target Start/End: Original strand, 15504151 - 15504394
Alignment:
| Q |
648 |
aggtcttgagtgatggatggagagggaaccttgaagttgctggggaaaatgcacttccaaggtatgacagtgaaggttacaaccaaatccttctaaatgc |
747 |
Q |
| |
|
|||| ||||||| || ||||||| ||| ||||||||||||| |||||||||||| |||||||||| || ||| ||||||||| | || ||||| |
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| T |
15504151 |
aggtattgagtggaggttggagagaaaacattgaagttgctggcgaaaatgcactttcaaggtatgatgcaacagcttataaccaaatcatactgaatgc |
15504250 |
T |
|
| Q |
748 |
aaggccaaatggtgttaacaaaaagggccctccaaaactaaggatgtatggagtcacatacctacgtttgacagaaga-attattccagaaacaaatttt |
846 |
Q |
| |
|
||| ||| | || || |||||| | |||||||||||||| ||||||||||||| |||||||| ||| | |||| || | || | | || |||||||| |
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|
| T |
15504251 |
aagaccacaaggggtcaacaaagacggccctccaaaacttcggatgtatggagtaacataccttcgtctatcagatgatctaatgcaacaatcaaatttt |
15504350 |
T |
|
| Q |
847 |
gatatattcaaaatctttgtgaaaaagatgcatgctaatcaggt |
890 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| ||||||| |
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| T |
15504351 |
gatatattcaaaaagtttgtggtaaagatgcatgcagatcaggt |
15504394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 29136869 - 29136928
Alignment:
| Q |
27 |
accacaattttcaggtgatcaaatatacacgtagttgaacacctgaaaattatggttaac |
86 |
Q |
| |
|
|||||||||| ||||| |||||| |||| ||||||||||| |||||||||||||||||| |
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|
| T |
29136869 |
accacaatttgaaggtgttcaaatctacatgtagttgaacatctgaaaattatggttaac |
29136928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 36081916 - 36081877
Alignment:
| Q |
139 |
aacgtaattaatcacctatttgaactgtgttaaccactta |
178 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
36081916 |
aacgtaattaatcacctacttgaactgtgttaaccactta |
36081877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 7926663 - 7926606
Alignment:
| Q |
23 |
attgaccacaattttcaggtgatcaaatatacacgtagttgaacacctgaaaattatg |
80 |
Q |
| |
|
|||||||||||||||||||| |||| | || | |||||||||||||||||||||||| |
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|
| T |
7926663 |
attgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattatg |
7926606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 49224942 - 49224901
Alignment:
| Q |
154 |
ctatttgaactgtgttaaccacttaaaagttgtcgcgaaagt |
195 |
Q |
| |
|
||||| ||||||||||||||||||| || ||||||||||||| |
|
|
| T |
49224942 |
ctattagaactgtgttaaccacttacaaattgtcgcgaaagt |
49224901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 27983310 - 27983261
Alignment:
| Q |
146 |
ttaatcacctatttgaactgtgttaaccacttaaaagttgtcgcgaaagt |
195 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
27983310 |
ttaaccacctgtttgatttgtgttaaccacttaaaagttgtcgcaaaagt |
27983261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 31305944 - 31305973
Alignment:
| Q |
57 |
gtagttgaacacctgaaaattatggttaac |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
31305944 |
gtagttgaacacctgaaaattatggttaac |
31305973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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