View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5416-Insertion-2 (Length: 600)
Name: NF5416-Insertion-2
Description: NF5416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5416-Insertion-2 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 77 - 600
Target Start/End: Complemental strand, 9818646 - 9818118
Alignment:
| Q |
77 |
cttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgttattttgagccttggaggctacaacttatttgatact |
176 |
Q |
| |
|
||||||| ||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
9818646 |
cttggaggctataacttatttcctattttgctttatgttatgttggaatattcgatatgttgttattttgagcctcggaggctacaacttatttgctact |
9818547 |
T |
|
| Q |
177 |
tgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatatgtgtttaattgtgtgcattctttgctactttagatttcat |
276 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
9818546 |
tgaattatattatgtttaaagtgttactagcaacgaactttgatgattagtaatgaatatgtgtttaattttgtgcgttctttgctactttagatttcat |
9818447 |
T |
|
| Q |
277 |
atctgtagtgcttgtattgttttcctagatgattcgacttagtgatcataccgctacatgttatggcgttttgggggtcggacactacgctgtctactac |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9818446 |
atctgtagtgcttgtattgttttcctagataattcgacttagtgatcataccgctacatgttatggcgttttgggggtcggacactatgctgtctactac |
9818347 |
T |
|
| Q |
377 |
cgactttaattttgatgaatatgaggctcaaatttgtcatgtttgatgatgaataagaaacagaagtatgcacaacaatgtcgcacttggcataatgtat |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9818346 |
cgactttaattttgatgaatatgaggctcaaatttgtcatgtttgatgatgaataagaaacagaagtatgcacaacaatgtcgcacttggcataatgtat |
9818247 |
T |
|
| Q |
477 |
g-----nnnnnnnnnnnnnnntactgaagctaacaaatcaaaacttcaggttcattttagttttgaacacatcaaaatccaaacttaaggttcatttaag |
571 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9818246 |
gaaaaataaaaaataaaaaaatactgaagctaacaaatcaaaacttcaggttcattttagttttgaacacatcaaaatccaaacttaaggtttatttaag |
9818147 |
T |
|
| Q |
572 |
tttctgttgtccattcgcttttcactcaa |
600 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9818146 |
tttctgttgtccattcgcttttcactcaa |
9818118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 73 - 329
Target Start/End: Complemental strand, 9824365 - 9824114
Alignment:
| Q |
73 |
gagccttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgttattttgagccttggaggctacaacttatttga |
172 |
Q |
| |
|
||||||||||| ||| |||||||||||| |||| |||||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
9824365 |
gagccttggaggctataacttatttccttttttgatttatgatatgtttgaatattagatatgtt---actttgagccatggaggctacaacttatttgc |
9824269 |
T |
|
| Q |
173 |
tacttgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatatgtgtttaattgtgtgcattctttgctactttagatt |
272 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| | ||||| || |
|
|
| T |
9824268 |
tacttgaattatattatgtttaaagtgttagtagcaaataactttgatgattagtaatgaata--tgtttaattttgtgcattctttgatgttttagttt |
9824171 |
T |
|
| Q |
273 |
tcatatctgtagtgcttgtattgttttcctagatgattcgacttagtgatcataccg |
329 |
Q |
| |
|
||||| |||||||||||||||||||||||| | ||| ||| |||||| ||||||| |
|
|
| T |
9824170 |
ccatatgtgtagtgcttgtattgttttcctatagaatttgacgtagtgaccataccg |
9824114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 4966672 - 4966586
Alignment:
| Q |
77 |
cttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgttattttgagccttggaggctacaactt |
166 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||| ||| |||||||||||||||| ||| ||||| |
|
|
| T |
4966672 |
cttggaggctagaacttgtttcctattttgctttatgctatgtttgaatattagat---gtgtcattttgagccttggagcctagaactt |
4966586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 4966748 - 4966656
Alignment:
| Q |
76 |
ccttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgt--tattttgagccttggaggctacaactt |
166 |
Q |
| |
|
|||||||| ||||||||||||||| | | |||||||||||||||||||||||| ||| ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
4966748 |
ccttggaggctagaacttatttccaattctgctttatgttatgtttgaatattggattagttgtgctattttgaatcttggaggctagaactt |
4966656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 76 - 298
Target Start/End: Original strand, 6408186 - 6408410
Alignment:
| Q |
76 |
ccttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgttattttgagccttggaggctacaacttatttgatac |
175 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||| || ||||||||| ||||||||||| || |||||| |||||| ||| |||||||||| ||| |
|
|
| T |
6408186 |
ccttggaggctagaacttatttcctattttgctttatattctgtttgaatgttagatatgtt---atgttgagctttggagactagaacttatttgctac |
6408282 |
T |
|
| Q |
176 |
ttgaattatatt-----atgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatatgtgtttaattgtgtgcattctttgctactttaga |
270 |
Q |
| |
|
|||||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | | ||| |
|
|
| T |
6408283 |
aagaattatattgtattatgtttgaaatattaatagcaatgaactttgatgattagtaatgaatttgtgtttaattctgtgcattcttctatgttctagt |
6408382 |
T |
|
| Q |
271 |
tttcatatctgtagtgcttgtattgttt |
298 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |
|
|
| T |
6408383 |
tttcatatgtgtagtgcttgaattgttt |
6408410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 1000339 - 1000247
Alignment:
| Q |
137 |
tgttattttgagccttggaggctacaacttatttgatacttgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatat |
236 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| ||| ||||||||||||||| |||||||||||||| |||||||| || |||||||||| |
|
|
| T |
1000339 |
tgttattttgagccttggtggctagaacttatttg---ctt------tattatgtttaaaatattagtagcaatgaattttgatgagtattaatgaatat |
1000249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 6411475 - 6411547
Alignment:
| Q |
174 |
acttgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatatgtgtttaatt |
246 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||||||||||||||| |||| |||| ||||||||||| |
|
|
| T |
6411475 |
acttgaattatattatgtttgaaatatttatagcaatgaactttgatgatcagtacagaatttgtgtttaatt |
6411547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 1000732 - 1000823
Alignment:
| Q |
143 |
tttgagccttggaggctacaacttatttgatacttgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaat |
234 |
Q |
| |
|
||||| |||||||||||| |||||||||| || ||| ||||||||| |||| ||| |||||||||||||||||||||| | |||||| |
|
|
| T |
1000732 |
tttgaaccttggaggctagaacttatttgcatttttctttagattatgtttgaaatattattagcaatgaactttgatgattatttatgaat |
1000823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 43545664 - 43545748
Alignment:
| Q |
162 |
aacttatttgatacttgaattatattatgtttaaaatgttag----tagcaatgaactttgatgattagtaatgaatatgtgttt |
242 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||| |||| |||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
43545664 |
aacttatttgctacttgaattatattatgtttgaaatattaggagcaagcaatgaactttgttgattagtaacgaatatgtgttt |
43545748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 41503582 - 41503524
Alignment:
| Q |
200 |
ttagtagcaatgaactttgatgattagtaatgaatatgtgtttaattgtgtgcattctt |
258 |
Q |
| |
|
||||||||||||||||| ||| ||| || |||||||||||||| ||| ||||||||||| |
|
|
| T |
41503582 |
ttagtagcaatgaacttcgattatttgttatgaatatgtgttttattttgtgcattctt |
41503524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University