View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5416-Insertion-3 (Length: 564)
Name: NF5416-Insertion-3
Description: NF5416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5416-Insertion-3 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 8 - 564
Target Start/End: Complemental strand, 10162674 - 10162118
Alignment:
| Q |
8 |
ctaacaacattctcaatatttgaagcagtaaccaattcatgtcttttagcccagtccttcacaaccaaaccaatctttaacacttgtgttatcaaaacac |
107 |
Q |
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| T |
10162674 |
ctaacaacattctcaatatttgaagcagtaaccaatttatgtcttttagcccagtccttcacaaccaaaccaatctttaacacttgtgttatcaaaacac |
10162575 |
T |
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| Q |
108 |
agtttcttggttggtcagaatgcataggccatgctgctattggcacccccattgaaatggtctctaagatagagttccatccacaatgactcataaaccc |
207 |
Q |
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| T |
10162574 |
agtttcttggttggtcagaatgcataggccatgctgctattggcacccccattgaaatggtctctaaggtagagttccatccacaatgactcataaaccc |
10162475 |
T |
|
| Q |
208 |
tcccgttgaagggtggcttagaatttccaactggggtgcccaatccctcacaacaaagcccattccttcaactctctcttcaaaccctttcgaaagttca |
307 |
Q |
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| T |
10162474 |
tcccgttgaagggtggcttagaatttccaactggggtgcccaatccctcacaacaaagcccattccttcaactctctcttcaaacccttttgaaagttca |
10162375 |
T |
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| Q |
308 |
cctcttttcccttcatttttatcaaagatgtctcctttatcagcatctctcaacacccaaataaactttatcttgctttgtttcaatccagttgcaatct |
407 |
Q |
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| T |
10162374 |
cctcttttcccttcatttttatcaaagatgtctcctttatcagcatctctcaacacccaaataaactttatcttgctttgtttcaatccagttgcaatct |
10162275 |
T |
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| Q |
408 |
gttcaatttcttcatctgtcaaggttgttgttgttccaaaagatacatatataactgagtttgtttcttgtttatcaagccattccatgcatgagtgcct |
507 |
Q |
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| T |
10162274 |
gttcaatttcttcatctgtcaaggttgttgttgttccaaaagatacatatataactgagtttgtttcttgtttatcaagccattccatgcatgagtgcct |
10162175 |
T |
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| Q |
508 |
accctttgaatctttcttctcctgatcaatgcttagagggttgaagggtcccactgc |
564 |
Q |
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| T |
10162174 |
accctttgaatctttcttctcctgatcaatggttagagggttgaagggtcccactgc |
10162118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 10163559 - 10163482
Alignment:
| Q |
12 |
caacattctcaatatttgaagcagtaaccaattcatgtcttttagcccagtccttcacaaccaaaccaatctttaaca |
89 |
Q |
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| T |
10163559 |
caacattctcaatatctgaagcagtaaccaattcatgtctattagcccaatcctcgacaaccaaaccaatctttaaca |
10163482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 564
Target Start/End: Complemental strand, 1609672 - 1609119
Alignment:
| Q |
8 |
ctaacaacattctcaatatttgaagcagtaaccaattcatgtcttttagcccagtccttcacaaccaaaccaatctttaacacttgtgttatcaaaacac |
107 |
Q |
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| T |
1609672 |
ctaacaacattctcaatatctgaagcagtaaccaactcatgtcttttagcccaatccatcacaaccaaaccaatctttaacacttgtgttatgaaaacac |
1609573 |
T |
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| Q |
108 |
agtttcttggttggtcagaatgcataggccatgctgctattggcacccccattgaaatggtctctaagatagagttccatccacaatgactcataaaccc |
207 |
Q |
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| T |
1609572 |
agtttcttggctggtcagaatgcataggccatgctgctattggcacccccattgaaatgctctctaaagtagagttccatccgcaatgactcataaaccc |
1609473 |
T |
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| Q |
208 |
tcccgttgaagggtggcttagaatttccaactggggtgcccaatccctcacaacaaagcccattccttcaactctctcttcaaaccctttcgaaagttca |
307 |
Q |
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| T |
1609472 |
tcctgttgaagggtggcttagaatttccaactggggtgcccaatccctcacaacaaaccccattccttcaactctctcttcaaacccttttgcaagttca |
1609373 |
T |
|
| Q |
308 |
cctcttttcccttcatttttatcaaagatgtctcctttatcagcatctctcaacacccaaataaactttatcttgctttgtttcaatccagttgcaatct |
407 |
Q |
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| T |
1609372 |
cctcttttcccttcatttccatcaaatatgtctcctttatcagcatctctcaacacccaaatgaactttatcttgctttgttccaacccagttgcaatct |
1609273 |
T |
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| Q |
408 |
gttcaatttcttcatctgtcaaggttgttgttgttccaaaagatacatatataactgagtttgtttcttgtttatcaagccattccatgcatgagtgcct |
507 |
Q |
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| T |
1609272 |
gttcaatttcttcatctgtcaaggttgttgttgttccaaaagatacatatataactgagtttggttcttgtttatcaagccattccatacataagtgcct |
1609173 |
T |
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| Q |
508 |
accctttgaatctttcttctcctgatcaatgcttagagggttgaagggtcccactgc |
564 |
Q |
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| T |
1609172 |
accctttgaatctttcttcttc---tcaatggtaagagggttgaagggtccaactgc |
1609119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 62 - 260
Target Start/End: Complemental strand, 37722076 - 37721878
Alignment:
| Q |
62 |
tccttcacaaccaaaccaatctttaacacttgtgttatcaaaacacagtttcttggttggtcagaatgcataggccatgctgctattggcacccccattg |
161 |
Q |
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| T |
37722076 |
tccttcacaaccaaaccaatcttaagcacttccgtaactaaaactctgttcctaggttggtcagagtgcataggccatgctgctattggcacccccatag |
37721977 |
T |
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| Q |
162 |
aaatggtctctaagatagagttccatccacaatgactcataaaccctcccgttgaagggtggcttagaatttccaactggggtgcccaatccctcacaa |
260 |
Q |
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| T |
37721976 |
taatactctccatacaagaattccatccacaatgactcataaaaccacctatagaagaatgacttaaaatttccaattgtggggcccaatctctcacaa |
37721878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 465
Target Start/End: Complemental strand, 37721784 - 37721664
Alignment:
| Q |
345 |
tatcagcatctctcaacacccaaataaactttatcttgctttgtttcaatccagttgcaatctgttcaatttcttcatctgtcaaggttgttgttgttcc |
444 |
Q |
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||||||||||||| || ||||||||||| ||| ||| ||||||| ||| ||| |||||| || | ||||| ||| ||| | |||| |||||| || || |
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| T |
37721784 |
tatcagcatctcttaatacccaaataaatttttgcttactttgttccaacccatttgcaagctctataatttgttcctcttttaaggctgttgtggtccc |
37721685 |
T |
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| Q |
445 |
aaaagatacatatataactga |
465 |
Q |
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| T |
37721684 |
aaaagatatataaattactga |
37721664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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