View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5416-Insertion-5 (Length: 285)

Name: NF5416-Insertion-5
Description: NF5416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5416-Insertion-5
NF5416-Insertion-5
[»] chr2 (3 HSPs)
chr2 (8-270)||(32136168-32136430)
chr2 (28-269)||(15497335-15497576)
chr2 (47-83)||(26797936-26797972)
[»] chr6 (1 HSPs)
chr6 (52-267)||(22458591-22458806)
[»] scaffold1127 (1 HSPs)
scaffold1127 (28-270)||(2418-2660)
[»] chr5 (2 HSPs)
chr5 (52-270)||(22126905-22127123)
chr5 (154-218)||(12411865-12411929)
[»] scaffold0597 (1 HSPs)
scaffold0597 (52-269)||(7983-8199)
[»] scaffold0996 (1 HSPs)
scaffold0996 (52-270)||(2460-2678)
[»] chr8 (1 HSPs)
chr8 (29-166)||(25819467-25819604)
[»] scaffold1024 (1 HSPs)
scaffold1024 (31-176)||(840-987)
[»] chr4 (1 HSPs)
chr4 (40-91)||(17116986-17117037)
[»] chr7 (1 HSPs)
chr7 (49-161)||(17073451-17073563)
[»] chr3 (1 HSPs)
chr3 (28-62)||(2290381-2290415)
[»] chr1 (1 HSPs)
chr1 (52-84)||(25276115-25276147)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 32136168 - 32136430
Alignment:
Q  8 gatataaccaccgacataccgtgacatcgtgtccaatattctgacagtgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32136168 gatataaccaccgacataccgtgacatcgtgtccaatattctgacaatgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgta 32136267  T
Q  108 tccttccctttccattgtgatttcatggaacattttacgtgaaaaatccatgtctactaagatgcgagcgtaatgaccatagagcctcttggtcgtggca 207  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32136268 tccttccctttccactgtgatttcatggaacattttacgtgcaaaatccatgtctactaagatgcgagcgtaatgaccatagagcctcttggtcgtggca 32136367  T
Q  208 ttgtcaataataagaggtgtgccaatggcgctggaaatttctcgtaaagtcctatccatccag 270  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32136368 ttgtcaataataagtggtgtgccaatggcgctagaaatttctcgtaaagtcctatccatccag 32136430  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 269
Target Start/End: Complemental strand, 15497576 - 15497335
Alignment:
Q  28 gtgacatcgtgtccaatattctgacagtgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccattgtga 127  Q
    |||||||| || ||||| || || |||||||||||||| || |||||||||||||| || ||||| || ||||||| ||||||||||||||| |  || |    
T  15497576 gtgacatcatggccaatgttttggcagtgtgaacaaaattcagggagccactcataggccacctctacattaaaagagtatccttccctttcaaccgtaa 15497477  T
Q  128 tttcatggaacattttacgtgaaaaatccatgtctactaagatgcgagcgtaatgaccatagagcctcttggtcgtggcattgtcaataataagaggtgt 227  Q
    ||||||  ||||| || || ||||||||||| || |||||||||||||| || |  ||||| || ||||||| ||| ||||| |||||||| || |||||    
T  15497476 tttcataaaacatcttgcgagaaaaatccatatcaactaagatgcgagcatagtttccataaagtctcttggacgttgcattatcaataatgagcggtgt 15497377  T
Q  228 gccaatggcgctggaaatttctcgtaaagtcctatccatcca 269  Q
    ||  |  || || | |||||||| ||| ||||||||||||||    
T  15497376 gctcacagcactagcaatttctcttaacgtcctatccatcca 15497335  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 26797936 - 26797972
Alignment:
Q  47 tctgacagtgtgaacaaaaatccgggagccactcata 83  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  26797936 tctgacagtgcgaacaaaaatcggggagccactcata 26797972  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 52 - 267
Target Start/End: Complemental strand, 22458806 - 22458591
Alignment:
Q  52 cagtgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccattgtgatttcatggaacattttacgtgaaa 151  Q
    |||||||||||||| || |||||||||||||| || ||||| || ||||||| ||||||||||||||| |  || |||||||  ||||| || || ||||    
T  22458806 cagtgtgaacaaaagtcagggagccactcataggccacctctacattaaaagagtatccttccctttcaaccgtaatttcataaaacatcttgcgagaaa 22458707  T
Q  152 aatccatgtctactaagatgcgagcgtaatgaccatagagcctcttggtcgtggcattgtcaataataagaggtgtgccaatggcgctggaaatttctcg 251  Q
    ||||||| || |||||||||||||| || || ||||| || |||||||  || ||||| |||||||| || |||||||| | ||| || ||||||||||     
T  22458706 aatccatatcgactaagatgcgagcatagtgtccataaagtctcttggatgttgcattatcaataatgagcggtgtgcccacggcactagaaatttctct 22458607  T
Q  252 taaagtcctatccatc 267  Q
    ||| ||||||||||||    
T  22458606 taacgtcctatccatc 22458591  T

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Target: scaffold1127 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold1127
Description:

Target: scaffold1127; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 270
Target Start/End: Complemental strand, 2660 - 2418
Alignment:
Q  28 gtgacatcgtgtccaatattctgacagtgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccattgtga 127  Q
    |||||||| || ||||| || || |||||||||||||| || |||||||||||||| || ||||| || ||||||  ||||||||||||||| |   | |    
T  2660 gtgacatcatggccaatgttttggcagtgtgaacaaaagtcagggagccactcataggccacctctacattaaaatagtatccttccctttcaaccataa 2561  T
Q  128 tttcatggaacattttacgtgaaaaatccatgtctactaagatgcgagcgtaatgaccatagagcctcttggtcgtggcattgtcaataataagaggtgt 227  Q
    ||||||  ||||| || || ||||||||||| || |||||||||||||| || || ||||| || ||||||| ||| ||||| |||||||| || |||||    
T  2560 tttcataaaacatcttgcgagaaaaatccatatcgactaagatgcgagcatagtgtccataaagtctcttggacgttgcattatcaataatgagcggtgt 2461  T
Q  228 gccaatggcgctggaaatttctcgtaaagtcctatccatccag 270  Q
    ||| | ||| || | |||||||| ||| |||||||||||||||    
T  2460 gcccacggcactagcaatttctcttaacgtcctatccatccag 2418  T

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Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 52 - 270
Target Start/End: Complemental strand, 22127123 - 22126905
Alignment:
Q  52 cagtgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccattgtgatttcatggaacattttacgtgaaa 151  Q
    |||||||||||||| || |||||||||||||| || ||||| || ||||||| ||||| ||||||||| |  || |||||||  ||||| || || ||||    
T  22127123 cagtgtgaacaaaagtcagggagccactcataggccacctctacattaaaagagtatctttccctttcaaccgtaatttcataaaacatcttgcgagaaa 22127024  T
Q  152 aatccatgtctactaagatgcgagcgtaatgaccatagagcctcttggtcgtggcattgtcaataataagaggtgtgccaatggcgctggaaatttctcg 251  Q
    ||||||| || |||||||||||||| ||||| || || || ||||||| ||| ||| | |||||||| || |||||||| | ||| |  | ||||||||     
T  22127023 aatccatatcgactaagatgcgagcataatgtccgtaaagtctcttggacgttgcactatcaataatgagcggtgtgcccacggcacaagcaatttctct 22126924  T
Q  252 taaagtcctatccatccag 270  Q
    ||| |||||||||||||||    
T  22126923 taacgtcctatccatccag 22126905  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 12411929 - 12411865
Alignment:
Q  154 tccatgtctactaagatgcgagcgtaatgaccatagagcctcttggtcgtggcattgtcaataat 218  Q
    |||||||||||||  |||||||||||||||||| |||| | |||||  || ||||||||||||||    
T  12411929 tccatgtctactagtatgcgagcgtaatgaccaaagagacgcttggaagtcgcattgtcaataat 12411865  T

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Target: scaffold0597 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0597
Description:

Target: scaffold0597; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 269
Target Start/End: Original strand, 7983 - 8199
Alignment:
Q  52 cagtgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccattgtgatttcatggaacattttacgtgaaa 151  Q
    |||||||||||||| ||  ||||||||||||| || ||||| || ||||||| ||||||||||||||| |  || |||||||  ||||| || || ||||    
T  7983 cagtgtgaacaaaagtcaaggagccactcataggccacctctacattaaaagagtatccttccctttcaaccgtaatttcataaaacatcttgcgagaaa 8082  T
Q  152 aatccatgtctactaagatgcgagcgtaatgaccatagagcctcttggtcgtggcattgtcaataataagaggtgtgccaatggcgctggaaatttctcg 251  Q
    ||||| | || |||||||||||||| || || ||||| || ||||||| ||| ||||| || ||||| || |||||||| |   | || ||||||||||     
T  8083 aatccgtatcgactaagatgcgagcatagtgtccataaagtctcttggacgttgcattatc-ataatgagcggtgtgcccacaacactagaaatttctct 8181  T
Q  252 taaagtcctatccatcca 269  Q
    ||| |||| |||||||||    
T  8182 taacgtccaatccatcca 8199  T

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Target: scaffold0996 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 270
Target Start/End: Complemental strand, 2678 - 2460
Alignment:
Q  52 cagtgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccattgtgatttcatggaacattttacgtgaaa 151  Q
    ||||| ||||||||  | ||||||||||| || || ||||| || |||||||  || ||||| |||||||  || |||||||| ||||| |  || || |    
T  2678 cagtgcgaacaaaaggcagggagccactcgtaggccacctccacattaaaagaataaccttctctttccaccgtaatttcatgaaacatctggcgagaga 2579  T
Q  152 aatccatgtctactaagatgcgagcgtaatgaccatagagcctcttggtcgtggcattgtcaataataagaggtgtgccaatggcgctggaaatttctcg 251  Q
    ||||||| || |||||||||||||| || || || || || ||||||||||| ||| | |||||||| || |||||||| |  || || |  |||||||     
T  2578 aatccatatcaactaagatgcgagcatagtgtccgtaaagtctcttggtcgttgcactatcaataatgagcggtgtgcccactgcactagcgatttctct 2479  T
Q  252 taaagtcctatccatccag 270  Q
    ||| |||||||||||||||    
T  2478 taacgtcctatccatccag 2460  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 25819604 - 25819467
Alignment:
Q  29 tgacatcgtgtccaatattctgacagtgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccattgtgat 128  Q
    ||||||| ||||||||||||||||| |||||||||||||| || | ||| |||||||| ||||| |   | || || || | ||||||||| |   ||||    
T  25819604 tgacatcatgtccaatattctgacaatgtgaacaaaaatcaggcatccattcataagccacctccaacgtgaaggcataccattccctttcaacgatgat 25819505  T
Q  129 ttcatggaacattttacgtgaaaaatccatgtctacta 166  Q
    |||||| || |||||||| || ||||||||||| ||||    
T  25819504 ttcatgaaatattttacgagagaaatccatgtcgacta 25819467  T

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Target: scaffold1024 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 176
Target Start/End: Complemental strand, 987 - 840
Alignment:
Q  31 acatcgtgtccaatattctgacagtgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccattgtga--t 128  Q
    ||||| || ||||| || || ||||||| ||||||||||||||||||||| ||  | ||||| |  ||||| |||||||||||||| || |  ||||  |    
T  987 acatcatgaccaatgttttggcagtgtgtacaaaaatccgggagccactcgtatacgacctcaatattaaatgcgtatccttccctctcaacagtgattt 888  T
Q  129 ttcatggaacattttacgtgaaaaatccatgtctactaagatgcgagc 176  Q
    |||||| || | ||| |||||||||||||| || ||||| ||||||||    
T  887 ttcatgaaataatttccgtgaaaaatccatatccactaaaatgcgagc 840  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 17116986 - 17117037
Alignment:
Q  40 ccaatattctgacagtgtgaacaaaaatccgggagccactcataagctacct 91  Q
    ||||||||||||||||| |||||||||||| ||||||| |||||||| ||||    
T  17116986 ccaatattctgacagtgggaacaaaaatccaggagccattcataagccacct 17117037  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 17073451 - 17073563
Alignment:
Q  49 tgacagtgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccattgtgatttcatggaacattttacgtg 148  Q
    ||||| |||| |||||| ||||| ||||||||||| || ||||| || ||||| || || |||||||| || |  ||||| ||||| || | ||| ||||    
T  17073451 tgacaatgtgtacaaaattccggaagccactcataggccacctccacattaaacgcataaccttccctctcaaccgtgatctcatgaaagagtttgcgtg 17073550  T
Q  149 aaaaatccatgtc 161  Q
    |||||||||||||    
T  17073551 aaaaatccatgtc 17073563  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 2290381 - 2290415
Alignment:
Q  28 gtgacatcgtgtccaatattctgacagtgtgaaca 62  Q
    |||||||| ||||||||||||||||||||||||||    
T  2290381 gtgacatcatgtccaatattctgacagtgtgaaca 2290415  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 25276115 - 25276147
Alignment:
Q  52 cagtgtgaacaaaaatccgggagccactcataa 84  Q
    ||||||||||| |||||||||||||||||||||    
T  25276115 cagtgtgaacagaaatccgggagccactcataa 25276147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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