View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5416_high_2 (Length: 407)
Name: NF5416_high_2
Description: NF5416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5416_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 6 - 395
Target Start/End: Complemental strand, 10155769 - 10155360
Alignment:
| Q |
6 |
gtagattattctgatatgtttaaaggccttttaggtagtttgtaatccgagtgatattagctaaatatgnnnnnnnnngctaataagctaaatatgtttt |
105 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10155769 |
gtagattagtctgatatgtttaaaggttttttaggtagtctgtaatccgagtgatattagctaaatatgtttttttttgctaataagctaaatatgtttt |
10155670 |
T |
|
| Q |
106 |
taaaaatgcattggtcttgtttatttaataaaatagcatgaccagacattaatatgacatagactatgttacaggtctataactctataactctat---- |
201 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10155669 |
taaaaatgcattggtctagtttatttaataaaatagtctgacctgacatgaatatgacatagactatgttataggtctataactctataactctatgtca |
10155570 |
T |
|
| Q |
202 |
---------------tcttaccctttttt-aaggaacctattcttatccaattgattgattttcattttctattctttttctccacttcaactttaattt |
285 |
Q |
| |
|
| |||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10155569 |
ggcggtttgacctatttttaccctttttttaaggaatctattcttacccagttgattgattttcattttctattctttttctccacttcaactttaattt |
10155470 |
T |
|
| Q |
286 |
ttgttggacttggaacactatcacattattttcacttaaatagaaaatagtgaatatttttattgttttcattgtatcaaagtgatacttttactagtaa |
385 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10155469 |
ttgttggacttggaacactatcaaattattttcacttaaatagaaaatagtgaatatttttattgttttcattgtatcaaagtgatacttttactagtaa |
10155370 |
T |
|
| Q |
386 |
aataaaattg |
395 |
Q |
| |
|
|||||||||| |
|
|
| T |
10155369 |
aataaaattg |
10155360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University