View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5416_low_4 (Length: 258)
Name: NF5416_low_4
Description: NF5416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5416_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 9818928 - 9818709
Alignment:
| Q |
15 |
aatatctgtgaacttattctagtttataaaattgttgctgatggggttaaccttttatctatgtcatgacaagtgagtgtgattctgtccctagaaaatg |
114 |
Q |
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| T |
9818928 |
aatatctgtgaacttcttctagtttataaaattcttgctgatggggttaaccttttat---------gacaagtgagtgtgattctgtccctagaaaatg |
9818838 |
T |
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| Q |
115 |
gatgtcttaaataagtaatactctttcttgattatttttcttttgagttccatttgagtttcttctaattgcaggttgtgaaggagccctttgatgcaac |
214 |
Q |
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| T |
9818837 |
gatgtcttaaataagtaatactctttcttgattatttttcttttgagttccatttgagttttttctaattgcaggttgtgaaggagccctttgatgcaac |
9818738 |
T |
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| Q |
215 |
ttttggtaatagggaatgctgttgttttt |
243 |
Q |
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| T |
9818737 |
ttttggtaatagggaatgctgttgttttt |
9818709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 243
Target Start/End: Complemental strand, 9824520 - 9824388
Alignment:
| Q |
115 |
gatgtcttaaataagtaatactctttcttgattattttt-ctt-ttga--gttccatttgagtttcttctaattgcaggttgtgaaggagccctttgatg |
210 |
Q |
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| T |
9824520 |
gatgtattaaataagaaatactctttcttgatttttttttcttcttgaaagttccatttgagtttcttttaattgcaggttgtgaaggagccctttgaag |
9824421 |
T |
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| Q |
211 |
caacttttggtaatagggaatgctgttgttttt |
243 |
Q |
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| T |
9824420 |
caactttttgtaataggaaatgctgttgttttt |
9824388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 225
Target Start/End: Complemental strand, 4966939 - 4966829
Alignment:
| Q |
109 |
aaaatggatgtcttaaataagtaatactctttcttgattatttttcttttgagttccatttgagtttcttctaattgcaggttgtgaaggagccctttga |
208 |
Q |
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| T |
4966939 |
aaaattgatgtcttgaataagaaatactctt----gattttttttctt--gagttacatatgagtttcttttaattgcaggttgtgaaggagccatttgt |
4966846 |
T |
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| Q |
209 |
tgcaacttttggtaata |
225 |
Q |
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| T |
4966845 |
tgcaacttttggcaata |
4966829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 9488740 - 9488780
Alignment:
| Q |
180 |
taattgcaggttgtgaaggagccctttgatgcaacttttgg |
220 |
Q |
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| T |
9488740 |
taattgtaggttgtgaaggagccctttggtgcaacttttgg |
9488780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 23202837 - 23202777
Alignment:
| Q |
165 |
catttgagtttcttctaattgcaggttgtgaaggagccctttgatgcaacttttggtaata |
225 |
Q |
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| T |
23202837 |
catttgaatttattttaattgtaggttgtgaacgagccctttggtgcaacttttggcaata |
23202777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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