View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5417-Insertion-2 (Length: 784)
Name: NF5417-Insertion-2
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5417-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 35 - 614
Target Start/End: Original strand, 14796612 - 14797198
Alignment:
| Q |
35 |
tgatgtctatgtaataccccttttctttgtatgatgctttactgaattatatataagtgattatgaatgaattgaactatgccttatgtatcactgatta |
134 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14796612 |
tgatgtctatgtaatacgccttttctttgtatgatgctttactgaattatgtatcagtgattatgaatgaattgaattatgccttatgtatcactgatta |
14796711 |
T |
|
| Q |
135 |
tggctttgtattttattaattatatgaattggaagaaaagtgtcattgctaattcaacctgtttcaaataaacataacaaacatagt------------- |
221 |
Q |
| |
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|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14796712 |
tg-ctttgtattttattagttatatgaattggaagaaaagtgtcattgctaattcaacctgtttcaaataaacataacaaacatagttatagcgtaatta |
14796810 |
T |
|
| Q |
222 |
--tatagcataataaagcacattatgtgcatatgtctcattacaaattaaagcacatcaagtgcacgtaatgtagcataaaacataaattaaatggaaag |
319 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
14796811 |
gttatagcataataaagcgcattatgtgcatatgtctcattacaaattaaagcacatcaagtgcacgtaatgtagcataaaacagaaattaaaaggaaag |
14796910 |
T |
|
| Q |
320 |
catctagttccaaaacatagtgcacaccaagtgcgtatgacagaccaaaaaacagttac-tagtaggcaagtgcataagtgaccaagtgcataagttaga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
14796911 |
catctagttccaaaacatagtgcacaccaagtgcatatgacagaccaaaaaacagctacatagtaggcaagtgcataagtgaccaagtgcataagtcaga |
14797010 |
T |
|
| Q |
419 |
ccnnnnnnnngtacatcaaaaaacagatggtagttgatacaactactgtgtagatcttgtagatagttctcccccaagacttcatcaatttaagacaggc |
518 |
Q |
| |
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|| ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
14797011 |
cc-aaaaaaagtacatcaaaaaacaaatggcagtcaatacaactactgtgtagatcttgtagatagttct-ccccaaggcttcatcaatttaaggcaggc |
14797108 |
T |
|
| Q |
519 |
acccaagaacaggtactttagcagggaacagcagcaacactcttcttgggttataacacccagttttcttccctcattatcaattgttataggttg |
614 |
Q |
| |
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| ||||||||||||||||||||| |||||| |||| ||||| |||||||| || ||| |||| ||||| |||||||||||||||| |||||||| |
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| T |
14797109 |
a-ccaagaacaggtactttagca-ggaacaatagcagcactc-tcttgggtcatgaca-ccag-cttctt-cctcattatcaattgtcataggttg |
14797198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 35 - 614
Target Start/End: Original strand, 15243604 - 15244190
Alignment:
| Q |
35 |
tgatgtctatgtaataccccttttctttgtatgatgctttactgaattatatataagtgattatgaatgaattgaactatgccttatgtatcactgatta |
134 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
15243604 |
tgatgtctatgtaatacgccttttctttgtatgatgctttactgaattatgtatcagtgattatgaatgaattgaattatgccttatgtatcactgatta |
15243703 |
T |
|
| Q |
135 |
tggctttgtattttattaattatatgaattggaagaaaagtgtcattgctaattcaacctgtttcaaataaacataacaaacatagt------------- |
221 |
Q |
| |
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|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15243704 |
tg-ctttgtattttattagttatatgaattggaagaaaagtgtcattgctaattcaacctgtttcaaataaacataacaaacatagttatagcgtaatta |
15243802 |
T |
|
| Q |
222 |
--tatagcataataaagcacattatgtgcatatgtctcattacaaattaaagcacatcaagtgcacgtaatgtagcataaaacataaattaaatggaaag |
319 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
15243803 |
gttatagcataataaagcgcattatgtgcatatgtctcattacaaattaaagcacatcaagtgcacgtaatgtagcataaaacagaaattaaaaggaaag |
15243902 |
T |
|
| Q |
320 |
catctagttccaaaacatagtgcacaccaagtgcgtatgacagaccaaaaaacagttac-tagtaggcaagtgcataagtgaccaagtgcataagttaga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
15243903 |
catctagttccaaaacatagtgcacaccaagtgcatatgacagaccaaaaaacagctacatagtaggcaagtgcataagtgaccaagtgcataagtcaga |
15244002 |
T |
|
| Q |
419 |
ccnnnnnnnngtacatcaaaaaacagatggtagttgatacaactactgtgtagatcttgtagatagttctcccccaagacttcatcaatttaagacaggc |
518 |
Q |
| |
|
|| ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |
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|
| T |
15244003 |
cc-aaaaaaagtacatcaaaaaacaaatggcagtcaatacaactactgtgtagatcttgtagatagttct-ccccaaggcttcatcaatttaaggcaggc |
15244100 |
T |
|
| Q |
519 |
acccaagaacaggtactttagcagggaacagcagcaacactcttcttgggttataacacccagttttcttccctcattatcaattgttataggttg |
614 |
Q |
| |
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| ||||||||||||||||||||| |||||| |||| ||||| |||||||| || ||| |||| ||||| |||||||||||||||| |||||||| |
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| T |
15244101 |
a-ccaagaacaggtactttagca-ggaacaatagcagcactc-tcttgggtcatgaca-ccag-cttctt-cctcattatcaattgtcataggttg |
15244190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 35 - 420
Target Start/End: Complemental strand, 14646136 - 14645733
Alignment:
| Q |
35 |
tgatgtctatgtaataccccttttctttgtatgatgctttactgaattata---tataagtgattatgaatgaattgaactatgccttatgtatcactga |
131 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
14646136 |
tgatgtctatgtaataccccttttagttgtatgatgctttactgaattattatgtatcagtgattatgaatgaattgaattatgccttatatatcactga |
14646037 |
T |
|
| Q |
132 |
ttatggctttgtattttattaattatatgaattggaagaaaagtgtcattgctaattcaacctgtttcaaataaacataacaaacatagttatagcataa |
231 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14646036 |
ttatgg-tttgtattttattagttatatgaattggaagaaaagtgtcattgctaattcaacctgtttcaaataaacataacaaacatagttatagcataa |
14645938 |
T |
|
| Q |
232 |
---------------taaagcacattatgtgcatatgtctcattacaaattaaagcacatcaagtgcacgtaatgtagcataaaacataaattaaatgga |
316 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
14645937 |
atagttatagcataataaagcacattatgtgcatatttctcattacaaattaaagcacatcaagtgcacgtaatgtagcataaaacagaaattaaaagga |
14645838 |
T |
|
| Q |
317 |
aagcatctagttccaaaacatagtgcacaccaagtgcgtatgacagaccaaaaaacagttac-tagtaggcaagtgcataagtgaccaagtgcataagtt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
14645837 |
aagcatctagttccaaaacatagtgcacaccaagtgcatatgacagaccaaaaaacagttacatagtaggcaagtgcataagtgcccaagtgcataagtt |
14645738 |
T |
|
| Q |
416 |
agacc |
420 |
Q |
| |
|
||||| |
|
|
| T |
14645737 |
agacc |
14645733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 455 - 614
Target Start/End: Complemental strand, 14634338 - 14634192
Alignment:
| Q |
455 |
atacaactactgtgtagatcttgtagatagttctcccccaagacttcatcaatttaagacaggcacccaagaacaggtactttagcagggaacagcagca |
554 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
14634338 |
atacaactactgtgtagatcttgtagatagttctccc-------ttcatcaatttaaggcaggcacc-aagaacaggtactttagca-ggaacagcagca |
14634248 |
T |
|
| Q |
555 |
acactcttcttgggttataacacccagttttcttccctcattatcaattgttataggttg |
614 |
Q |
| |
|
||||| |||||||| |||||| |||| ||||| |||||||||||||||| |||||||| |
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|
| T |
14634247 |
gcactc-tcttgggtcataaca-ccag-cttctt-cctcattatcaattgtcataggttg |
14634192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 226 - 373
Target Start/End: Complemental strand, 26270067 - 26269920
Alignment:
| Q |
226 |
gcataataaagcacattatgtgcatatgtctcattacaaattaaagcacatcaagtgcacgtaatgtagcataaaacataaattaaatggaaagcatcta |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| |
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|
| T |
26270067 |
gcataataaagcacattatgtgcatatgtctcattacaaattaaagcacatcaagtgcacgtaatgtagcataaaacagaaattaaaatgcaagcatcta |
26269968 |
T |
|
| Q |
326 |
gttccaaaacatagtgcacaccaagtgcgtatgacagaccaaaaaaca |
373 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||||||||||||| |
|
|
| T |
26269967 |
gttccaaaacacagtgcacatcaagtgtatatgacagaccaaaaaaca |
26269920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 457 - 578
Target Start/End: Complemental strand, 26269849 - 26269723
Alignment:
| Q |
457 |
acaactactgtgtagatcttgtagatagttctcccccaagacttcatcaatttaagacaggcacc--------caagaacaggtactttagcagggaaca |
548 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||| |||| ||| |||||||||||||||| |||||| |
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|
| T |
26269849 |
acaactactgtgtagatcttgtagatatttct-ccccaagacttcatcaagttaaggcagccaccaagtctggcaacaacaggtactttagca-ggaaca |
26269752 |
T |
|
| Q |
549 |
gcagcaacactcttcttgggttataacacc |
578 |
Q |
| |
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|||||||||||| |||||||| |||||||| |
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|
| T |
26269751 |
gcagcaacactc-tcttgggtcataacacc |
26269723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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