View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5417_high_10 (Length: 337)
Name: NF5417_high_10
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5417_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 25135309 - 25135621
Alignment:
| Q |
17 |
aaaaactagcacatgtctgaaacttgccattccagaagaaagatttaacaaagataatttcctaagaatttgattcctcttgtatgattttgacatttgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25135309 |
aaaaactagcacatgtctgaaacttgccattccagaagaaagatttaacaaagataatttcctaagaatttgattcctcttgtatgattttgacatttgc |
25135408 |
T |
|
| Q |
117 |
aagttgatgaatttgatacctttactctgcaaattacattttcagtgacatacatgatacatgataatgcattatggtgcctgatgcttttatggtgaat |
216 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25135409 |
aagttgatgaattcgatacctttactctacaaattacattttcagtgacatacatgatacatgataatgcattatggtgcctgatgcttttatggtgaat |
25135508 |
T |
|
| Q |
217 |
gatgta---ccaaccttatctatgcaggatagccgaggcagcaggtatatgtcctgtttgtcgtaggaacatgaagaaggtgaggagaatttttactgtt |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25135509 |
gatgtatgcccaaccttatctatgcaggatagccgaggcagcaggtatatgtcctgtttgtcgtaggaacatgaagaaggtgaggagaatttttactgtt |
25135608 |
T |
|
| Q |
314 |
tgatctgtgctcc |
326 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
25135609 |
tgatcagtgctcc |
25135621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University