View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5417_high_12 (Length: 285)
Name: NF5417_high_12
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5417_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 44700140 - 44700414
Alignment:
| Q |
1 |
gataacttttggcattgtcattttgtgggatgattcgcccaatggacttctcgatcgtgtaagatatgaccttaagacaccatgttagaatcttctcgtt |
100 |
Q |
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| T |
44700140 |
gataacttttggcattgtcattttgtgggatgattcgcccaatggacttatcgatagtgtaagatatgaccttaagacaccatgttagaatcttctcgtt |
44700239 |
T |
|
| Q |
101 |
ttccattgacaatcttatggaattcagtagattcattcgtaagggaagtaggtttcttagttcttaaatctaaatcgagattgttaataactaagtagag |
200 |
Q |
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| T |
44700240 |
ttccattgacaatcttatgggattcagtagattcattcgtaagggaagtaggtttcttagttcttaaatctaaatcgagattgttaataactaagtagag |
44700339 |
T |
|
| Q |
201 |
atcgagagaatctttccagtcctcatagttagtctcattcagagtttcacggagctatcattcatggaagaataa |
275 |
Q |
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| T |
44700340 |
atcgagagaatctttccggtcctcatagttagtctcattcagagtttcacggagctatcattcatggaagaataa |
44700414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 44698623 - 44698455
Alignment:
| Q |
17 |
gtcattttgtgggatgattcgcccaatggacttctcgatcgtgtaagatatgaccttaagacaccatgttagaatcttctcgttttccattgacaatctt |
116 |
Q |
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| T |
44698623 |
gtcattttgtgggatgctttgtctaatggacttctccatagtgtaagctatgaccttaagacactttgttagacccttcccattttccatagagggtctt |
44698524 |
T |
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| Q |
117 |
atggaattcagtagattcattcgtaagggaagtaggtttcttagttcttaaatctaaatcgagattgtt |
185 |
Q |
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| T |
44698523 |
atgggattcagtagactcattggtaagggaagtaggcttctcagtttttaaaactaaatcaaggttgtt |
44698455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 44700554 - 44700471
Alignment:
| Q |
187 |
ataactaagtagagatcgagagaatctttccagtcctcatagttagtctcattcagagtttcacggagctatcattcatggaagaataa |
275 |
Q |
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|||||| |||||||||||||| ||||||||| ||||||||||||||||||| | ||||||||||||||| ||||| |||||||| |
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| T |
44700554 |
ataacttagtagagatcgagacaatctttccggtcctcatagttagtctcagt-----tttcacggagctatctatcatgaaagaataa |
44700471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 11841038 - 11841101
Alignment:
| Q |
184 |
ttaataactaagtagagatcgagagaatctttccagtcctcatagttagtctcattcagagttt |
247 |
Q |
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| T |
11841038 |
ttaataactaagtagtgatttagagaatctttccagtcctcatagttaatcccattcagagttt |
11841101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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