View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5417_high_14 (Length: 280)

Name: NF5417_high_14
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5417_high_14
NF5417_high_14
[»] chr5 (3 HSPs)
chr5 (19-271)||(25110406-25110658)
chr5 (19-271)||(25169498-25169750)
chr5 (60-232)||(33852247-33852419)
[»] chr6 (1 HSPs)
chr6 (103-271)||(4790412-4790580)
[»] scaffold0196 (1 HSPs)
scaffold0196 (54-234)||(31491-31671)
[»] chr4 (1 HSPs)
chr4 (54-234)||(10988173-10988353)
[»] chr1 (1 HSPs)
chr1 (44-270)||(21355025-21355251)
[»] scaffold0001 (1 HSPs)
scaffold0001 (54-234)||(198655-198835)
[»] chr8 (4 HSPs)
chr8 (54-234)||(21407501-21407681)
chr8 (54-234)||(21801993-21802173)
chr8 (56-234)||(27916395-27916573)
chr8 (56-234)||(27962814-27962992)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 25110658 - 25110406
Alignment:
Q  19 catagaatatgcggtcatcaacaggtggtctcatgtatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctatt 118  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25110658 catagaatatgcggtcatcaacatgtggtctcatttatggcttgaaagtgattctattagtgcggttcaagccttccataaaccatctcttattcctatt 25110559  T
Q  119 cgtcttcgcaacaggtggcataattgctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctg 218  Q
     ||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25110558 tgtcttcggaagaggtggcataattgctctcaaaataatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctg 25110459  T
Q  219 ctttgggtcatgatgttcacgacacggtttggttcacgttgttgccttcatct 271  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25110458 ctttgggacatgatgttcaagacacggtttggttcacgttgttgccttcatct 25110406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 25169750 - 25169498
Alignment:
Q  19 catagaatatgcggtcatcaacaggtggtctcatgtatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctatt 118  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25169750 catagaatatgcggtcatcaacatgtggtctcatttatggcttgaaagtgattctattagtgcggttcaagccttccataaaccatctcttattcctatt 25169651  T
Q  119 cgtcttcgcaacaggtggcataattgctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctg 218  Q
     ||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25169650 tgtcttcggaagaggtggcataattgctctcaaaataatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctg 25169551  T
Q  219 ctttgggtcatgatgttcacgacacggtttggttcacgttgttgccttcatct 271  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25169550 ctttgggacatgatgttcaagacacggtttggttcacgttgttgccttcatct 25169498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 33852419 - 33852247
Alignment:
Q  60 ttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaactaattt 159  Q
    |||||| |||||||  | |||| ||||| || ||||||||||||||||||||||||||| ||||||| |||  |||||| || ||| |||| | |   ||    
T  33852419 ttgaaagtgattcttcttgtgcagttcaagctttccataaaccatctcttattcctatttgtcttcggaacgagtggcacaactgcactcataatggctt 33852320  T
Q  160 gtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgat 232  Q
    |||| | ||||| || || |||||||| ||||| ||||||||| |||| | |||||  |||||||| ||||||    
T  33852319 gtttatgatttgttctcacatcttccgagaagggaatgtttgtactgacgaccttgtagctttgggacatgat 33852247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 103 - 271
Target Start/End: Complemental strand, 4790580 - 4790412
Alignment:
Q  103 atctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgt 202  Q
    ||||||||||||||||| |||||| |||||||||||||| || |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4790580 atctcttattcctattcttcttcggaacaggtggcataactgttctcaaaaaaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgt 4790481  T
Q  203 gctgatggccttgctgctttgggtcatgatgttcacgacacggtttggttcacgttgttgccttcatct 271  Q
    | ||||||| |||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||||    
T  4790480 gttgatggcgttgcagctttgggacatgatattcaagacacggtttggttcacgttgttgccttcatct 4790412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 234
Target Start/End: Complemental strand, 31671 - 31491
Alignment:
Q  54 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 153  Q
    |||||||||||| |||||||  |||||||||||| || |||||||||||||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  31671 tatggcttgaaagtgattcttctagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaa 31572  T
Q  154 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 234  Q
       | | ||| | |||||||| || |||||||| ||||| |||||||| || |||||||| || |||||||| ||||||||    
T  31571 gggtctctttattatttgctcccacatcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 31491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 234
Target Start/End: Complemental strand, 10988353 - 10988173
Alignment:
Q  54 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 153  Q
    |||||||||||| |||||||  |||||||||||| || |||||||||||||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  10988353 tatggcttgaaagtgattcttctagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaa 10988254  T
Q  154 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 234  Q
       | | ||| | |||||||| || |||||||| ||||| |||||||| || |||||||| || |||||||| ||||||||    
T  10988253 gggtctctttattatttgctcccacatcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 10988173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 270
Target Start/End: Original strand, 21355025 - 21355251
Alignment:
Q  44 tggtctcatgtatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataatt 143  Q
    ||||||||| ||||||||||||  || |||  |||||||||||| || |||||||||||||||||||||||| || ||||||| ||| | || || || |    
T  21355025 tggtctcatttatggcttgaaagcgactcttctagtgcggttcaggctttccataaaccatctcttattcctgtttgtcttcggaaccgatgacacaact 21355124  T
Q  144 gctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgttcacgacac 243  Q
    |  | || | |||| ||||||||||||| || ||||| |||||  |||||||||| |||||| |||| ||||| ||  |||| |  ||| |||| | |||    
T  21355125 gtacacataataatctgtttctcatttgttctcatatattccggaaaggaaatgtctgtgcttatggacttgcagccatggggcgcgatattcaaggcac 21355224  T
Q  244 ggtttggttcacgttgttgccttcatc 270  Q
    ||| |||||||| ||||||||| ||||    
T  21355225 ggtctggttcactttgttgcctccatc 21355251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 234
Target Start/End: Complemental strand, 198835 - 198655
Alignment:
Q  54 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 153  Q
    |||||||||||| |||||||  ||||||||| || || |||||| ||||||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  198835 tatggcttgaaagtgattcttctagtgcggtacaagctttccatcaaccatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaa 198736  T
Q  154 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 234  Q
    |  | | ||| | |||||||| || |||||||| ||||| ||| || | || |||||||| || |||||||| ||||||||    
T  198735 tggtctctttattatttgctcccacatcttccgagaaggcaatattagcgcggatggcctcgccgctttgggacatgatgt 198655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 234
Target Start/End: Complemental strand, 21407681 - 21407501
Alignment:
Q  54 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 153  Q
    |||||||||||| |||||||  ||||||||| || || |||||||||| ||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  21407681 tatggcttgaaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaa 21407582  T
Q  154 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 234  Q
    |  | | ||| | |||||||| || |||||| | ||||| |||||||| || |||||||| ||  ||||||| ||||||||    
T  21407581 tggtctctttattatttgctcccacatcttcagagaagggaatgtttgcgcggatggcctcgccactttgggacatgatgt 21407501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 234
Target Start/End: Complemental strand, 21802173 - 21801993
Alignment:
Q  54 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 153  Q
    |||||||||||| |||||||  ||||||||| || || |||||||||| ||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  21802173 tatggcttgaaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaa 21802074  T
Q  154 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 234  Q
    |  | | ||| | |||||||| || |||||| | ||||| |||||||| || |||||||| ||  ||||||| ||||||||    
T  21802073 tggtctctttattatttgctcccacatcttcagagaagggaatgtttgcgcggatggcctcgccactttgggacatgatgt 21801993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 27916395 - 27916573
Alignment:
Q  56 tggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaacta 155  Q
    ||||||||||  ||||||  ||||||||| || || ||||||||||||||||||||||   || ||||||||||| | |||||||||||  |||| | |     
T  27916395 tggcttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattcaggttggtcttcgcaaccgttggcataattgtactcacaatg 27916494  T
Q  156 atttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 234  Q
     | | ||| | |||||||  ||  ||||||| ||||| |||||||| || |||||||| || |||||||| ||||||||    
T  27916495 gtctctttattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 27916573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 27962814 - 27962992
Alignment:
Q  56 tggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaacta 155  Q
    ||||||||||  ||||||  ||||||||| || || ||||||||||||||||||||||   || ||||||||||| | |||||||||||  |||| | |     
T  27962814 tggcttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatg 27962913  T
Q  156 atttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 234  Q
     | | ||| | |||||||  ||  ||||||| ||||| |||||||| || |||||||| || |||||||| ||||||||    
T  27962914 gtctctttattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 27962992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University