View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5417_high_4 (Length: 488)
Name: NF5417_high_4
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5417_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 246 - 474
Target Start/End: Complemental strand, 35718386 - 35718158
Alignment:
| Q |
246 |
cggttgaaccaaatgtggttcaactgcgagtcaagtagactgcaatacaactaggataaaaccaacagacaaattggtcagttatcggagcggttcaacc |
345 |
Q |
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| T |
35718386 |
cggttgaaccaaatgtggttcaactgcgattcaagtagactgcagtacaactaggataaaaccaacggacaaattggtcagttatcggatcggttcaacc |
35718287 |
T |
|
| Q |
346 |
agcatgtttggttcaatttttgacacattgattctaaggcttgccacccttatccatcaaagataacaatacatttccatccctgaagttaatcaagtaa |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35718286 |
ggcatgtttggttcaatttttgacacattgattctaaggcttgccacccttatccatcaaagataacaatacatttccatccctgaagttaatcaagtaa |
35718187 |
T |
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| Q |
446 |
taatttacatccctgaaagtatacaacct |
474 |
Q |
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| T |
35718186 |
taatttacatccctgaaagtatacaacct |
35718158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 35718624 - 35718418
Alignment:
| Q |
9 |
acatcatcaaattcctgtatgtaaaatgaaatcaagaatgtaaatttatcagaatcgttcccttttcttcacattgctatnnnnnnnntccccaaattgt |
108 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
35718624 |
acataatcaaatacctgtatgtaaaatgaaatcaagaatgtaaatttatcagaatcgttcccttttcttcacattgctataaaaaatatccccaagttgt |
35718525 |
T |
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| Q |
109 |
ttattaaagaaataatgttttataaatcaggtcgagatcaaaccaatggttcaatcagttcaactatagttgaaatagatgacaaatacatacattaatt |
208 |
Q |
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| T |
35718524 |
ttattaaagaaataacgttttataaattaggtcgagatcaaaccaatggttcaatcggttcaactatagttgaaatagatgacaaatacatacactaatt |
35718425 |
T |
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| Q |
209 |
aatcgat |
215 |
Q |
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||||||| |
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| T |
35718424 |
aatcgat |
35718418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 10355642 - 10355572
Alignment:
| Q |
9 |
acatcatcaaattcctgtatgtaaaatgaaatcaagaatgtaaatttatcagaatcgttcccttttcttca |
79 |
Q |
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|||| ||||| | ||||||||||| |||||||||| |||||||||||| |||||| ||| | ||||||||| |
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| T |
10355642 |
acataatcaagtacctgtatgtaacatgaaatcaaaaatgtaaatttaccagaatggtttctttttcttca |
10355572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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