View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5417_high_6 (Length: 463)

Name: NF5417_high_6
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5417_high_6
NF5417_high_6
[»] chr4 (25 HSPs)
chr4 (70-205)||(10042207-10042342)
chr4 (327-463)||(10041979-10042117)
chr4 (331-422)||(27112024-27112115)
chr4 (333-463)||(52468282-52468412)
chr4 (333-422)||(4167913-4168002)
chr4 (331-463)||(36118439-36118571)
chr4 (14-59)||(10042490-10042535)
chr4 (333-422)||(37744932-37745021)
chr4 (338-453)||(24396935-24397051)
chr4 (338-440)||(2135324-2135427)
chr4 (362-440)||(36178697-36178776)
chr4 (331-422)||(39329414-39329505)
chr4 (331-443)||(45656169-45656282)
chr4 (343-423)||(40089522-40089602)
chr4 (343-422)||(54780783-54780862)
chr4 (342-422)||(35779347-35779427)
chr4 (343-422)||(10978906-10978985)
chr4 (343-422)||(34027585-34027664)
chr4 (331-422)||(36362893-36362983)
chr4 (343-422)||(37777245-37777324)
chr4 (343-422)||(38209613-38209692)
chr4 (331-422)||(40217226-40217317)
chr4 (343-422)||(43455553-43455632)
chr4 (331-422)||(51691937-51692030)
chr4 (381-422)||(32915429-32915470)
[»] chr8 (21 HSPs)
chr8 (331-422)||(41677197-41677288)
chr8 (331-427)||(25561512-25561607)
chr8 (333-456)||(7944510-7944634)
chr8 (331-422)||(5942685-5942776)
chr8 (338-446)||(8102908-8103017)
chr8 (338-425)||(15078754-15078841)
chr8 (331-422)||(15167438-15167529)
chr8 (331-422)||(39332428-39332519)
chr8 (333-422)||(11290175-11290264)
chr8 (343-422)||(42600783-42600862)
chr8 (333-422)||(5973130-5973219)
chr8 (343-422)||(3048540-3048619)
chr8 (331-422)||(5721548-5721639)
chr8 (343-422)||(23798284-23798363)
chr8 (352-419)||(34789888-34789955)
chr8 (343-422)||(37430181-37430260)
chr8 (343-422)||(45475818-45475897)
chr8 (338-463)||(8646202-8646327)
chr8 (363-463)||(30674384-30674485)
chr8 (331-421)||(34048729-34048821)
chr8 (366-422)||(41879205-41879261)
[»] chr7 (20 HSPs)
chr7 (344-456)||(38971255-38971367)
chr7 (363-422)||(26917729-26917788)
chr7 (331-456)||(27237410-27237536)
chr7 (331-422)||(7398440-7398531)
chr7 (343-422)||(38414898-38414977)
chr7 (331-457)||(12419481-12419608)
chr7 (331-463)||(9021782-9021912)
chr7 (338-422)||(2611284-2611368)
chr7 (346-422)||(36902946-36903022)
chr7 (331-422)||(6765703-6765794)
chr7 (343-422)||(23551093-23551172)
chr7 (366-422)||(33162361-33162417)
chr7 (343-422)||(18776788-18776867)
chr7 (343-422)||(20091303-20091382)
chr7 (331-422)||(20153190-20153281)
chr7 (331-422)||(23859062-23859153)
chr7 (343-422)||(29077221-29077300)
chr7 (343-422)||(48983866-48983945)
chr7 (362-422)||(21763609-21763669)
chr7 (338-422)||(36891574-36891658)
[»] chr6 (16 HSPs)
chr6 (331-422)||(2477607-2477698)
chr6 (338-422)||(20611789-20611873)
chr6 (332-446)||(21183673-21183788)
chr6 (343-422)||(33774121-33774200)
chr6 (343-422)||(28075787-28075866)
chr6 (341-422)||(34397859-34397940)
chr6 (362-422)||(30121785-30121845)
chr6 (331-422)||(6159430-6159521)
chr6 (343-422)||(13727422-13727501)
chr6 (343-422)||(19737715-19737794)
chr6 (343-422)||(20711743-20711822)
chr6 (343-422)||(21479498-21479577)
chr6 (343-422)||(24711022-24711101)
chr6 (343-422)||(27788711-27788790)
chr6 (331-423)||(4036940-4037032)
chr6 (366-422)||(17353981-17354037)
[»] chr5 (25 HSPs)
chr5 (331-422)||(14318405-14318496)
chr5 (331-422)||(2412077-2412168)
chr5 (331-422)||(36868896-36868987)
chr5 (331-463)||(1366504-1366637)
chr5 (331-422)||(2530917-2531008)
chr5 (331-422)||(34425892-34425983)
chr5 (331-422)||(11242338-11242429)
chr5 (343-422)||(27079012-27079091)
chr5 (342-422)||(15639643-15639723)
chr5 (331-422)||(10543663-10543753)
chr5 (343-422)||(16198814-16198893)
chr5 (333-422)||(22648756-22648845)
chr5 (333-422)||(33037771-33037860)
chr5 (338-422)||(2024662-2024746)
chr5 (366-422)||(7338023-7338079)
chr5 (345-456)||(10407464-10407576)
chr5 (330-422)||(40794347-40794439)
chr5 (343-422)||(9364292-9364371)
chr5 (362-425)||(26718966-26719029)
chr5 (362-425)||(26988710-26988773)
chr5 (343-422)||(34756386-34756465)
chr5 (331-422)||(41911637-41911728)
chr5 (344-422)||(27924084-27924162)
chr5 (231-271)||(15639177-15639217)
chr5 (366-422)||(40389556-40389612)
[»] chr2 (20 HSPs)
chr2 (331-422)||(21665723-21665814)
chr2 (331-422)||(38400786-38400877)
chr2 (331-422)||(16227391-16227482)
chr2 (333-422)||(13800567-13800657)
chr2 (331-420)||(12134065-12134154)
chr2 (331-463)||(24035526-24035659)
chr2 (331-412)||(37182658-37182739)
chr2 (343-422)||(3155217-3155296)
chr2 (344-422)||(27506763-27506841)
chr2 (339-421)||(28425734-28425816)
chr2 (333-422)||(16096998-16097087)
chr2 (343-422)||(9046029-9046108)
chr2 (343-422)||(10762588-10762667)
chr2 (343-422)||(12337471-12337550)
chr2 (343-422)||(24410437-24410516)
chr2 (343-422)||(29939885-29939964)
chr2 (331-417)||(11912785-11912871)
chr2 (381-422)||(34694013-34694054)
chr2 (381-422)||(34716425-34716466)
chr2 (231-271)||(21666039-21666079)
[»] scaffold0097 (1 HSPs)
scaffold0097 (293-422)||(38876-39005)
[»] chr3 (14 HSPs)
chr3 (333-422)||(8420320-8420409)
chr3 (338-417)||(28689389-28689468)
chr3 (343-422)||(8073361-8073440)
chr3 (343-422)||(47467688-47467767)
chr3 (343-422)||(21582775-21582854)
chr3 (343-422)||(43207261-43207339)
chr3 (343-422)||(54619226-54619305)
chr3 (344-422)||(37168372-37168450)
chr3 (352-422)||(54407181-54407251)
chr3 (345-422)||(38681116-38681193)
chr3 (333-422)||(49393085-49393172)
chr3 (370-422)||(42453435-42453487)
chr3 (340-412)||(52374657-52374729)
chr3 (338-453)||(54574818-54574934)
[»] scaffold1590 (1 HSPs)
scaffold1590 (331-422)||(281-372)
[»] chr1 (19 HSPs)
chr1 (331-422)||(38547058-38547149)
chr1 (333-455)||(45758496-45758619)
chr1 (331-455)||(6221678-6221801)
chr1 (330-423)||(10925975-10926068)
chr1 (331-453)||(39134712-39134836)
chr1 (341-422)||(50881440-50881521)
chr1 (331-422)||(26803948-26804036)
chr1 (343-422)||(9173045-9173124)
chr1 (343-422)||(9181027-9181106)
chr1 (341-422)||(6771801-6771882)
chr1 (333-422)||(43235792-43235881)
chr1 (338-422)||(38853530-38853613)
chr1 (343-422)||(5316692-5316771)
chr1 (343-422)||(23185439-23185518)
chr1 (343-422)||(27559649-27559728)
chr1 (333-440)||(5533314-5533423)
chr1 (345-422)||(16140069-16140146)
chr1 (381-422)||(21740959-21741000)
chr1 (362-427)||(35392301-35392366)
[»] scaffold1320 (1 HSPs)
scaffold1320 (338-425)||(1350-1437)
[»] scaffold0012 (1 HSPs)
scaffold0012 (338-427)||(206506-206596)
[»] scaffold0018 (1 HSPs)
scaffold0018 (338-422)||(173533-173617)
[»] scaffold0182 (1 HSPs)
scaffold0182 (331-440)||(23997-24107)
[»] scaffold0003 (1 HSPs)
scaffold0003 (338-419)||(351360-351441)
[»] scaffold0039 (1 HSPs)
scaffold0039 (343-422)||(106539-106618)
[»] scaffold0227 (1 HSPs)
scaffold0227 (330-410)||(16015-16095)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 10042342 - 10042207
Alignment:
Q  70 attttcttttttgaccataaaaaattgcttaatttggaaattaggtgggcatcaatattctcaagaaacgcttaattttggtgagtagttttttagagag 169  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  10042342 attttcttctttaaccataaaaaattgcttaatttggaaattaggtggccatcgatagtctcaagaaacgcttaattttggtgagtagttttttagagag 10042243  T
Q  170 gagttttggtaagtagttttgatttgatactacaca 205  Q
     | ||| |||||||||||||||||||||||||||||    
T  10042242 aactttgggtaagtagttttgatttgatactacaca 10042207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 327 - 463
Target Start/End: Complemental strand, 10042117 - 10041979
Alignment:
Q  327 ttatagggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtattta-tcttttaaaaattt 425  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| ||||| || |||||||||| | ||||||||||||    
T  10042117 ttatagggtgatttgaggttcctcctgtatacggtagtgattttcacatttaggtgtatcacatacatacggcaccttgtatttatttttttaaaaattt 10042018  T
Q  426 aactataatattgttacttt-acaaaaaatacgctttta 463  Q
    || || || ||||||  ||| | ||||||||||||||||    
T  10042017 aaatagaacattgttcttttaaaaaaaaatacgctttta 10041979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 27112024 - 27112115
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| ||||||| | |||||||||||||||| | |||||| |||||||| |||| |||||||||||||||||||||    
T  27112024 agggtggtttgaggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaa 27112115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 333 - 463
Target Start/End: Original strand, 52468282 - 52468412
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt-aaaaatttaactat 431  Q
    |||| ||||||||||||| || |||| | |||||||||||| ||| ||||||| ||||||||||| || |||||||||||||||| |||||||||| ||     
T  52468282 ggtggtttgaggttcctcatgcatacggtagtgattttcacctttggatgtataacatatatacggcaccttgtatttatcttttaaaaaatttaaatag 52468381  T
Q  432 aatattgttactttacaaaaaatacgctttta 463  Q
    || |||||| ||||  |||||||||| |||||    
T  52468382 aacattgtt-cttttaaaaaaatacgttttta 52468412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 422
Target Start/End: Complemental strand, 4168002 - 4167913
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||||||||||||| ||||||  | |||||||||||| ||| | |||||| |||||||||| || |||||||||||||||||||||    
T  4168002 ggtgatttgaggttcctcatgtataaggtagtgattttcacctttgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaa 4167913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 463
Target Start/End: Complemental strand, 36118571 - 36118439
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttta-aaaatttaact 429  Q
    |||||| || |||||| ||| ||||||| | ||||||||||| |||| | ||||||||||||||||| || ||||||||||||||||| ||||||||| |    
T  36118571 agggtggttagaggttactcatgtatacggtagtgattttcatatttgggtgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaat 36118472  T
Q  430 ataatattgttactttacaaaaaatacgctttta 463  Q
    | || ||||||  |||| |||||||||| |||||    
T  36118471 agaacattgttcattta-aaaaaatacgttttta 36118439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 10042535 - 10042490
Alignment:
Q  14 atataaaatatgttgatgtggtatggggttaagaatttttattgga 59  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  10042535 atataaaatatgttgatggggtatggggttaagaatttttattgga 10042490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 422
Target Start/End: Complemental strand, 37745021 - 37744932
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||| |||||||||||||  |||||| | |||||||||||| ||| |||||||| ||||||| || || ||| |||||||||||||||||    
T  37745021 ggtggtttgaggttcctcaagtatacggtagtgattttcacctttggatgtatcgcatatatgcgacaccttatatttatcttttaaaaa 37744932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 453
Target Start/End: Original strand, 24396935 - 24397051
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt-aaaaatttaactataatat 436  Q
    ||||||||||||| |||||||   |||||||||||| |||   ||||||||||||||||  || ||| |||||||||||| |||||||||| || |||||    
T  24396935 tttgaggttcctcatgtatacgatagtgattttcacctttgagtgtatcacatatatactgcaccttatatttatcttttaaaaaatttaaataaaatat 24397034  T
Q  437 tgttactttacaaaaaa 453  Q
    ||||  |||| ||||||    
T  24397035 tgttcttttaaaaaaaa 24397051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 440
Target Start/End: Complemental strand, 2135427 - 2135324
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttta-aaaatttaactataatat 436  Q
    ||||||||||||| | |||||   |||||| || || ||| |||||||| |||||||||| || ||||||||||||||||| ||||||||| || |||||    
T  2135427 tttgaggttcctcatatatacgatagtgatgtttacctttggatgtatcgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaatat 2135328  T
Q  437 tgtt 440  Q
    ||||    
T  2135327 tgtt 2135324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 440
Target Start/End: Original strand, 36178697 - 36178776
Alignment:
Q  362 agtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaa-aatttaactataatattgtt 440  Q
    |||||||||||||||| | |||||| |||||||||| || ||||||||||||||||||| ||||||| || || ||||||    
T  36178697 agtgattttcacatttgggtgtatcgcatatatacgacaccttgtatttatcttttaaataatttaaatagaacattgtt 36178776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 39329505 - 39329414
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||| ||||||||||||||| | |  ||||||||  ||| | ||||||||||||||||  || |||||||||||||||||||||    
T  39329505 agggtggtttgatgttcctcctgtatacggtatggattttcatctttgggtgtatcacatatatacaacaccttgtatttatcttttaaaaa 39329414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 443
Target Start/End: Original strand, 45656169 - 45656282
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt-aaaaatttaact 429  Q
    |||||| |||||||||| || |||||||    ||||||||||||||| ||| |||| |||||||| | || |||| ||||||||||| |||||||||| |    
T  45656169 agggtggtttgaggttcgtcatgtatacgttcgtgattttcacatttggatttatcgcatatatatgacaccttgcatttatcttttaaaaaatttaaat 45656268  T
Q  430 ataatattgttact 443  Q
    | || |||||||||    
T  45656269 aaaacattgttact 45656282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 423
Target Start/End: Original strand, 40089522 - 40089602
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaat 423  Q
    |||||||| ||||||| | ||| |||||||| ||| |||||| | |||||||||| || ||| ||||||||||||||||||    
T  40089522 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaat 40089602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 54780783 - 54780862
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || |||||||||||||||||||||    
T  54780783 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 54780862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 35779427 - 35779347
Alignment:
Q  342 aggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||||||| ||||||| | | | |||||||| ||| | |||| | |||||||||| || |||||||||||||||||||||    
T  35779427 aggttcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaa 35779347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 10978906 - 10978985
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | | | |||| | |||||||||| || |||||||||||||||||||||    
T  10978906 ggttcctcatgtatacggtagtcattttcacttctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaa 10978985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 34027585 - 34027664
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  34027585 ggttcctcatgtataccgtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaa 34027664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 36362983 - 36362893
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||  ||||||  | |||||||| ||||||| | |||||  |||||||||| ||  ||||||||||||||||||||    
T  36362983 agggtggtttgaggttccta-tgtatatggtagtgatttccacatttgggtgtattgcatatatacggcactttgtatttatcttttaaaaa 36362893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 37777324 - 37777245
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  37777324 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaa 37777245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 38209692 - 38209613
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | | | |||| | |||||||||| || |||||||||||||||||||||    
T  38209692 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 38209613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 40217226 - 40217317
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||| ||| ||||||    | |||||||||  ||| |||||||| |||||||||| || ||| |||||||||||||||||    
T  40217226 agggtggtttgaggttactcatgtatatgctaatgattttcatctttggatgtatcgcatatatacgacaccttatatttatcttttaaaaa 40217317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 43455632 - 43455553
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  43455632 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaa 43455553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 51692030 - 51691937
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacattta--gatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| |||||||||| || ||||||  | |||||||||||| |||   | |||| | |||||||||| || |||||||||||||||||||||    
T  51692030 agggtggtttgaggttcatcgtgtatatggtagtgattttcactttttttggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 51691937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 32915429 - 32915470
Alignment:
Q  381 tgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||| |||||||||||| || |||||||||||||||||||||    
T  32915429 tgtaccacatatatacggcaccttgtatttatcttttaaaaa 32915470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 41677288 - 41677197
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| ||||||||| |||||||||||| |||||||||||| |||||||||| || |||||||||||||||||||||    
T  41677288 agggtggtttgaggttcctcatgtatacagtagtgattttcacctttagatgtatcgcatatatacgacatcttgtatttatcttttaaaaa 41677197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 331 - 427
Target Start/End: Complemental strand, 25561607 - 25561512
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaatttaa 427  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||||| | | |||| |||||||||| || ||||||||||||||| ||| ||||||    
T  25561607 agggtggtttgaggttcctcatgtatacggcagtgattttcacatttgggt-tatcgcatatatacggcaccttgtatttatctttaaaagatttaa 25561512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 456
Target Start/End: Complemental strand, 7944634 - 7944510
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt-aaaaatttaactat 431  Q
    |||| ||||||||||||| ||||||| | |||||||||||| ||| | ||||  ||||||||||| || ||||||||||| |||| |||||||||| ||     
T  7944634 ggtggtttgaggttcctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacggcaccttgtatttattttttaaaaaatttaaataa 7944535  T
Q  432 aatattgttactttacaaaaaatac 456  Q
    || ||||||  |||| |||||||||    
T  7944534 aacattgttcttttaaaaaaaatac 7944510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 5942685 - 5942776
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| ||||||| | |||||||||||| ||| | |||| | || ||||||| || |||||||||||||||||||||    
T  5942685 agggtggtttgaggttcctcatgtatacggtagtgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaa 5942776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 446
Target Start/End: Original strand, 8102908 - 8103017
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt-aaaaatttaactataatat 436  Q
    ||||||||||||| ||||||| | | |||||||||| ||||| |||| | |||||||||  || |||||||||||||||| |||||||||| ||||| ||    
T  8102908 tttgaggttcctcatgtatacggtaatgattttcacctttaggtgtaccgcatatatactgcaccttgtatttatcttttaaaaaatttaaatataacat 8103007  T
Q  437 tgttacttta 446  Q
    | ||| ||||    
T  8103008 tattatttta 8103017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 425
Target Start/End: Original strand, 15078754 - 15078841
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaattt 425  Q
    ||||||||||||| |||||||   |||||||||||||||| | |||||  |||||||||  || ||| ||||||||||||||||||||    
T  15078754 tttgaggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattt 15078841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 15167529 - 15167438
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| |||||||   |||||||||||||||| | |||||| |||||||||  ||  || |||||||||||||||||    
T  15167529 agggtggtttgaggttcctcatgtatacgatagtgattttcacatttgggtgtatcgcatatatacaacactttatatttatcttttaaaaa 15167438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 39332519 - 39332428
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| ||||||| | |||||||||||| ||| |||||| | | |||||| | || |||||||||||||||| ||||    
T  39332519 agggtggtttgaggttcctcatgtatacggtagtgattttcacctttggatgtaccgcttatatatgacaccttgtatttatctttttaaaa 39332428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 422
Target Start/End: Original strand, 11290175 - 11290264
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||| ||||||||| ||| ||||||| | |||||||||||| |||   ||||  ||||||||||| || |||||||||||||||||||||    
T  11290175 ggtggtttgaggttgctcatgtatacggtagtgattttcacctttgagtgtacaacatatatacgacaccttgtatttatcttttaaaaa 11290264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 42600783 - 42600862
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| |||||||||||| || ||| |||||||||||||||||    
T  42600783 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaa 42600862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 422
Target Start/End: Complemental strand, 5973219 - 5973130
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||| ||||||||||||| ||||||| | | |||||||||  | | | ||||  ||||||||||| || |||||||||||||||||||||    
T  5973219 ggtggtttgaggttcctcgtgtatacggtaatgattttcatctatgggtgtacaacatatatacgacaccttgtatttatcttttaaaaa 5973130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 3048619 - 3048540
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||  | ||| |||| | |||||||||| || |||||||||||||||||||||    
T  3048619 ggttcctcgtgtatacggtagtcattttcatctctaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 3048540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 5721548 - 5721639
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| |||||||||||||  |||||| | |||||||||||| ||| | |||| |   |||||| | || |||||||||||||||||||||    
T  5721548 agggtggtttgaggttcctcaggtatacggtagtgattttcacttttgggtgtaccgattatatagggcaccttgtatttatcttttaaaaa 5721639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 23798363 - 23798284
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  23798363 ggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaa 23798284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 419
Target Start/End: Complemental strand, 34789955 - 34789888
Alignment:
Q  352 tgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaa 419  Q
    ||||||| | |||||||||||| ||| | ||||  ||||||||||| || ||||||||||||||||||    
T  34789955 tgtatacggtagtgattttcacctttgggtgtacaacatatatacgacatcttgtatttatcttttaa 34789888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 37430260 - 37430181
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| ||||| || | ||| |||| | |||||||||| || |||||||||||||||||||||    
T  37430260 ggttcctcatgtatacggtagtcatttttacctctaggtgtaacgcatatatacggcaccttgtatttatcttttaaaaa 37430181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 45475818 - 45475897
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | | | |||| | |||||||||| || |||||||||||||||||||||    
T  45475818 ggttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 45475897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 463
Target Start/End: Original strand, 8646202 - 8646327
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt-aaaaatttaactataatat 436  Q
    ||||||||| ||  ||||||| | ||||||||||||||||   |||||  ||||||||||  | |||||||||||||||| |||||||||| || || ||    
T  8646202 tttgaggtttcttatgtatacggtagtgattttcacatttgcgtgtatg-catatatacgataccttgtatttatcttttaaaaaatttaaatagaacat 8646300  T
Q  437 tgttactttacaaaaaatacgctttta 463  Q
    ||||  |||| ||||| |||| |||||    
T  8646301 tgttcttttaaaaaaattacgttttta 8646327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 463
Target Start/End: Complemental strand, 30674485 - 30674384
Alignment:
Q  363 gtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaa-atttaactataatattgttactttacaaaaaatacgcttt 461  Q
    ||||||||||| |||   |||||| |||||||||| || ||| |||||||||||||||| |||||| || || ||||||  || | |||||||||| |||    
T  30674485 gtgattttcacctttgagtgtatcgcatatatacgacaccttatatttatcttttaaaacatttaaatagaacattgttctttaaaaaaaaatacgtttt 30674386  T
Q  462 ta 463  Q
    ||    
T  30674385 ta 30674384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 34048821 - 34048729
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatc--acatatatacgtcaacttgtatttatcttttaaaa 421  Q
    |||||| | ||||| ||||| ||||||||| |||||||||||  ||| | ||||||  | ||||||||| ||  |||||||||||||||||||    
T  34048821 agggtggtatgaggatcctcatgtatacagtagtgattttcatctttgggtgtatcatatatatatacgacacattgtatttatcttttaaaa 34048729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 422
Target Start/End: Original strand, 41879205 - 41879261
Alignment:
Q  366 attttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||| |||||| | ||||||||||  | |||||||||||||||||||||    
T  41879205 attttcacctttggatgtaccgcatatatacggtaccttgtatttatcttttaaaaa 41879261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 344 - 456
Target Start/End: Original strand, 38971255 - 38971367
Alignment:
Q  344 gttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaatttaactataatattgttact 443  Q
    ||||||| ||| ||| | |||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||| || ||||||| |  |    
T  38971255 gttcctcgtgtttacggtagtgattttcacatttaggtgtataacatatatacgacaccttgtatttatcttttaaaaatttaaataaaatattgatctt 38971354  T
Q  444 ttacaaaaaatac 456  Q
    ||| |||||||||    
T  38971355 ttaaaaaaaatac 38971367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 26917788 - 26917729
Alignment:
Q  363 gtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  26917788 gtgattttcacatttagatgtatcacatatatacgtcatcttgtatttttcttttaaaaa 26917729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 331 - 456
Target Start/End: Complemental strand, 27237536 - 27237410
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttta-aaaatttaact 429  Q
    |||||| ||||||||||||| |||||||   |||||||||||| |||||||  |||||||||||||  || ||||||||||||||||| ||||||||| |    
T  27237536 agggtggtttgaggttcctcatgtatacgatagtgattttcacctttagattcatcacatatatacaacaccttgtatttatcttttaaaaaatttaaat 27237437  T
Q  430 ataatattgttactttacaaaaaatac 456  Q
    | || ||||||  |||| |||||||||    
T  27237436 agaacattgttcttttaaaaaaaatac 27237410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 7398440 - 7398531
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| ||||||  | |||||||||||| ||||| ||||||||||||||| | || ||||||||||||||| |||||    
T  7398440 agggtggtttgaggttcctcatgtatatggtagtgattttcacctttaggtgtatcacatatatatggcaccttgtatttatctttcaaaaa 7398531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 38414977 - 38414898
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||||| ||| |||||||| ||| | |||| ||||||||||||||| ||| |||||||||||||||||    
T  38414977 ggttcctcatgtatacagtagtcattttcacctttgggtgtaccacatatatacgtcaccttatatttatcttttaaaaa 38414898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 457
Target Start/End: Complemental strand, 12419608 - 12419481
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt-aaaaatttaact 429  Q
    |||||| ||||||||||||| ||||| ||  |||||||||||  ||| ||||||||||| ||||| |  |  ||||||||||||||| |||||||||| |    
T  12419608 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaat 12419509  T
Q  430 ataatattgttactttacaaaaaatacg 457  Q
    | || ||||||  |||| ||||||||||    
T  12419508 agaacattgttcttttaaaaaaaatacg 12419481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 463
Target Start/End: Complemental strand, 9021912 - 9021782
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttta-aaaatttaact 429  Q
    |||||| |||||||| |||| ||||||| | |||||||||||| ||| | |||| | |||||||||| ||  |||||||||||||||| ||||||||| |    
T  9021912 agggtggtttgaggt-cctcatgtatacggtagtgattttcacctttgggtgtaccgcatatatacggcacattgtatttatcttttaaaaaatttaaat 9021814  T
Q  430 ataatattgttactttacaaaaaatacgctttta 463  Q
    |  | |||||| ||||| ||||||||||||||||    
T  9021813 agcaaattgtt-cttta-aaaaaatacgctttta 9021782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 2611368 - 2611284
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||||||||||| |||||||||  |||||||||||  ||   |||| | |||||||||| || |||||||||||||||||||||    
T  2611368 tttgaggttcctcatgtatacagttgtgattttcaccattgtgtgtaccgcatatatacgacaccttgtatttatcttttaaaaa 2611284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 36903022 - 36902946
Alignment:
Q  346 tcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||| ||||||||| | |||||||||| ||||| ||||  ||||||||||| || ||||||||||||| |||||||    
T  36903022 tcctcatgtatacagtactgattttcacctttaggtgtacaacatatatacgacatcttgtatttatctattaaaaa 36902946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 6765794 - 6765703
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||| ||| | ||||| | |||||||||||| ||| ||||||   | |||||||| || |||||||||||||||||||||    
T  6765794 agggtggtttgaggttactcttatatacggtagtgattttcacctttggatgtacggcttatatacgacaccttgtatttatcttttaaaaa 6765703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 23551172 - 23551093
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| |||||| | |||||||||| || ||| |||||||||||||||||    
T  23551172 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttatatttatcttttaaaaa 23551093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 422
Target Start/End: Complemental strand, 33162417 - 33162361
Alignment:
Q  366 attttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||| |||| | |||||||||| || |||||||||||||||||||||    
T  33162417 attttcacctttaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 33162361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 18776867 - 18776788
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||| ||| ||||||| | ||| |||||||||| | | |||| | |||||||||| || |||||||||||||||||||||    
T  18776867 ggtttctcatgtatacggtagtcattttcacatctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 18776788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 20091382 - 20091303
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  20091382 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaa 20091303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 20153190 - 20153281
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| |||||| | |||| ||||||| |||||||||||||  ||| | | |||| |||||||||  ||  ||||||||||||||||||||    
T  20153190 agggtggtttgagatccctcatgtatacggcagtgattttcatctttgggtttatcgcatatatacaacactttgtatttatcttttaaaaa 20153281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 23859062 - 23859153
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||| ||||| ||||||| | ||| |||||||  ||| | |||||| ||||||||||  |  ||||||||||||||||||||    
T  23859062 agggtggtttgaggatcctcatgtatacggtagtaattttcatctttgggtgtatcgcatatatacggtacattgtatttatcttttaaaaa 23859153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 29077221 - 29077300
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | | | |||| | |||||||||| || |||||||||||||||||||||    
T  29077221 ggttcctcatgtatacggtagtcattttcacctcttggtgtaccgcatatatacgacaccttgtatttatcttttaaaaa 29077300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 48983945 - 48983866
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  48983945 ggttcctcatgtatacggtagttattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaa 48983866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 422
Target Start/End: Complemental strand, 21763669 - 21763609
Alignment:
Q  362 agtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||||||| ||| | |||||| ||||||||||  |  ||||||||||||||||||||    
T  21763669 agtgattttcactttttggtgtatcgcatatatacgatactttgtatttatcttttaaaaa 21763609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 422
Target Start/End: Original strand, 36891574 - 36891658
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||||||||||| ||||||| | |||||||||||| ||| |||||| |  ||||||||  ||  ||||||| ||| ||||||||    
T  36891574 tttgaggttcctcatgtatacggtagtgattttcacctttggatgtaccgaatatatacaacacattgtattcatcatttaaaaa 36891658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 2477698 - 2477607
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| ||||||| | |||||||||||||||| | |||||| |||||||| |||| |||||||||||||||||||||    
T  2477698 agggtggtttgaggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaa 2477607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 422
Target Start/End: Original strand, 20611789 - 20611873
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||||||||||| ||||||| | |||||||||||| ||| ||||| ||  ||||||||| || |||||||||||| ||||||||    
T  20611789 tttgaggttcctcatgtatacggtagtgattttcacctttggatgtgtcgtatatatacgacaccttgtatttatcgtttaaaaa 20611873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 446
Target Start/End: Complemental strand, 21183788 - 21183673
Alignment:
Q  332 gggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttta-aaaatttaacta 430  Q
    ||||| ||||||||||||| ||||||| | |||||||||||  ||| | |||| ||||||||||||  |  |||||||||||||||| ||||||||| ||    
T  21183788 gggtggtttgaggttcctcatgtatacggtagtgattttcaactttgggtgtaccacatatatacgctactttgtatttatcttttaaaaaatttaaata 21183689  T
Q  431 taatattgttacttta 446  Q
     |||||| ||| ||||    
T  21183688 gaatatttttatttta 21183673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 33774121 - 33774200
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||||||| | |||| | |||||||||| || |||||||||||||||||||||    
T  33774121 ggttcctcatgtatacggtagtcattttcacatttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 33774200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 28075787 - 28075866
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||||| |||||||||| || ||| |||||||||||||||||    
T  28075787 ggttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacggcaccttatatttatcttttaaaaa 28075866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 422
Target Start/End: Original strand, 34397859 - 34397940
Alignment:
Q  341 gaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||||| ||| |||   ||| ||||| || ||||| |||| | ||||||||||||| |||||||||||||||||||||    
T  34397859 gaggttcctcatgtttacgatagtcatttttacctttaggtgtaccgcatatatacgtcaccttgtatttatcttttaaaaa 34397940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 422
Target Start/End: Original strand, 30121785 - 30121845
Alignment:
Q  362 agtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||||||| ||| |||||||| |||||||| | || ||||||||||| |||||||||    
T  30121785 agtgattttcacctttggatgtatcgcatatatatgacaccttgtatttattttttaaaaa 30121845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 6159430 - 6159521
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||  | ||||| | |||||||| ||| |||  ||||| | |||||||||| ||  ||||||||||||||||||||    
T  6159430 agggtggtttgaggttccttatatatacggtagtgatttccacctttgaatgtaccgcatatatacgacacattgtatttatcttttaaaaa 6159521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 13727501 - 13727422
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | | | |||| | |||||||||| || |||||||||||||||||||||    
T  13727501 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 13727422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 19737794 - 19737715
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | ||| |||| | |||||||||| || ||||||||||||||| |||||    
T  19737794 ggttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatttatctttaaaaaa 19737715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 20711822 - 20711743
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  20711822 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaa 20711743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 21479498 - 21479577
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | | | |||| | |||||||||| || |||||||||||||||||||||    
T  21479498 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 21479577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 24711101 - 24711022
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | |   |||| |||||||||||| || |||||||||||||||||||||    
T  24711101 ggttcctcatgtatacggtagtcattttcacctctgagtgtaccacatatatacggcaccttgtatttatcttttaaaaa 24711022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 27788790 - 27788711
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  27788790 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaa 27788711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 423
Target Start/End: Original strand, 4036940 - 4037032
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaat 423  Q
    |||||| ||||| ||||||| | ||||| | |||||| || || ||| | |||| || ||||||||| || ||||||||||||| ||||||||    
T  4036940 agggtggtttgaagttcctcatatatacggtagtgatctttacctttgggtgtaccatatatatacggcaccttgtatttatctcttaaaaat 4037032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 422
Target Start/End: Original strand, 17353981 - 17354037
Alignment:
Q  366 attttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||||||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  17353981 attttcacatttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaa 17354037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 14318496 - 14318405
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| ||||||| | |||||||||||  ||| ||||||||||||||||||| || |||||||||||||||||||||    
T  14318496 agggtggtttgaggttcctcatgtatacggtagtgattttcatttttggatgtatcacatatatacgacaccttgtatttatcttttaaaaa 14318405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 2412077 - 2412168
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||||| |||| ||| |||||||||| ||  |||||||||| |||||||||    
T  2412077 agggtggtttgaggttcctcatgtatacagtagtgattttcacatttggatgcatcgcatatatacgacactttgtatttattttttaaaaa 2412168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 36868987 - 36868896
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| |||||| |||||| ||||||| | |||||||||||||||| | |||| |||||||||||| || |||||||||||||||||||||    
T  36868987 agggtggtttgagattcctcatgtatacggtagtgattttcacatttgggtgtaccacatatatacgacaccttgtatttatcttttaaaaa 36868896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 463
Target Start/End: Complemental strand, 1366637 - 1366504
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctt-ttaaaaatttaact 429  Q
    |||||| | ||||||||||| | ||||| | |||||||||||||||||| |||||| |||||||||  || |||||||||||||| | |||||||||| |    
T  1366637 agggtggtatgaggttcctcatatatacggtagtgattttcacatttaggtgtatcgcatatataccacatcttgtatttatcttataaaaaatttaaat 1366538  T
Q  430 ataatattgttactttacaaaaaatacgctttta 463  Q
    | || ||||||  |||| |||||||||| |||||    
T  1366537 agaacattgttcttttaaaaaaaatacgttttta 1366504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 2531008 - 2530917
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| ||||||||| |||||||||||| ||| |||||| |  ||||||||| ||  ||||||||||||||||||||    
T  2531008 agggtggtttgaggttcctcatgtatacagtagtgattttcacctttggatgtaccgtatatatacgacacattgtatttatcttttaaaaa 2530917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 34425892 - 34425983
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| ||||||| | | ||||||| |  ||||| ||||||||||||||||| || |||||||||||||||||||||    
T  34425892 agggtggtttgaggttcctcatgtatacggtaatgattttaatctttaggtgtatcacatatatacggcaccttgtatttatcttttaaaaa 34425983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 11242429 - 11242338
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| ||||||| | |||||||| ||  ||| | |||||||||||||||| |||  ||||||||||||||||||||    
T  11242429 agggtggtttgaggttcctcatgtatacggtagtgatttccatctttggttgtatcacatatatacatcattttgtatttatcttttaaaaa 11242338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 27079012 - 27079091
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||||| ||| |||||||| ||||| |||| | |||||||||| || |||||||||||||||||||||    
T  27079012 ggttcctcatgtatacagtagtcattttcacctttaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 27079091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 15639643 - 15639723
Alignment:
Q  342 aggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||||||  |||||||  ||||||||||||  ||| |||||||| ||||||||||||| ||||||||||||||| |||||    
T  15639643 aggttccttatgtatacgacagtgattttcatctttggatgtatcgcatatatacgtcaccttgtatttatctttaaaaaa 15639723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 10543663 - 10543753
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| |||||| |||||  ||||||| | |||||||||||| ||| |||||||| ||||||||| ||| ||| |||||||||||||||||    
T  10543663 agggtggtttgagattccta-tgtatacggtagtgattttcacctttggatgtatcgcatatatacatcaccttatatttatcttttaaaaa 10543753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 16198893 - 16198814
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||||| |||||||||| || ||| |||||||||||||||||    
T  16198893 ggttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacgacaccttatatttatcttttaaaaa 16198814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 422
Target Start/End: Complemental strand, 22648845 - 22648756
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||| ||||||||| ||  | ||||||| ||||||| |||| ||| |||||  |||||||||||| ||  ||||||||||||||||||||    
T  22648845 ggtggtttgaggtttcttatttatacagtagtgattgtcacctttggatgtgccacatatatacgacacattgtatttatcttttaaaaa 22648756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 422
Target Start/End: Original strand, 33037771 - 33037860
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||| ||||||||||||| ||||||| | | || ||||||| ||| | ||||  |||||||||||  | |||||||||||||||||||||    
T  33037771 ggtggtttgaggttcctcatgtatacggtaatggttttcacctttgggtgtacaacatatatacgatatcttgtatttatcttttaaaaa 33037860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 2024746 - 2024662
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||||| ||||| ||||||  | |||||||||||  ||| | ||||||||||||||||| ||  |||||||||||||| |||||    
T  2024746 tttgaggatcctcatgtatatggtagtgattttcatctttgggtgtatcacatatatacggcacattgtatttatctttaaaaaa 2024662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 422
Target Start/End: Original strand, 7338023 - 7338079
Alignment:
Q  366 attttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||| |||| | |||||||||| || |||||||||||||||||||||    
T  7338023 attttcacctttaggtgtaccgcatatatacgacaccttgtatttatcttttaaaaa 7338079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 456
Target Start/End: Original strand, 10407464 - 10407576
Alignment:
Q  345 ttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt-aaaaatttaactataatattgttact 443  Q
    |||||| || |||| | ||| |||||||| ||||||||||  |||||| |||| || ||||| |||||||||| |||||||||| || || ||||||  |    
T  10407464 ttcctcatgcatacggtagtaattttcacttttagatgtacaacatatgtacgacaccttgtgtttatcttttaaaaaatttaaatagaacattgttctt 10407563  T
Q  444 ttacaaaaaatac 456  Q
    ||| |||||||||    
T  10407564 ttaaaaaaaatac 10407576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 422
Target Start/End: Complemental strand, 40794439 - 40794347
Alignment:
Q  330 tagggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||||| ||||||||| ||| ||||||| | |||||||||||| ||| | ||||||| |||| |||| |   |||||||| |||||||||||    
T  40794439 tagggtggtttgaggtttctcatgtatacggtagtgattttcaccttttggtgtatcatatatttacggctctttgtatttgtcttttaaaaa 40794347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 9364292 - 9364371
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  9364292 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaa 9364371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 26719029 - 26718966
Alignment:
Q  362 agtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaattt 425  Q
    |||||||||||| |||   |||||| |||||||||| ||  |||||||||||||||||||||||    
T  26719029 agtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattt 26718966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 26988773 - 26988710
Alignment:
Q  362 agtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaattt 425  Q
    |||||||||||| |||   |||||| |||||||||| ||  |||||||||||||||||||||||    
T  26988773 agtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattt 26988710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 34756465 - 34756386
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | | | |||| | |||||||||| || |||||||||||||||||||||    
T  34756465 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 34756386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 41911728 - 41911637
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||||||||||||||| | |||||   ||||||||| || ||| | |||| | | |||||||| || ||||||||| |||||||||||    
T  41911728 agggtgatttgaggttcctcatatatacgatagtgatttttacttttgggtgtaccgcttatatacgacaccttgtatttctcttttaaaaa 41911637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 27924084 - 27924162
Alignment:
Q  344 gttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||||| ||||||| | ||| ||||| || ||| |||||| | |||||||||| || ||| |||||||||||||||||    
T  27924084 gttcctcatgtatacggtagtcatttttacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaa 27924162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 15639177 - 15639217
Alignment:
Q  231 tgcaaggagctcaatgaaactggacctccctaaggtatggg 271  Q
    |||||||||||||||| ||||||| ||||| ||||||||||    
T  15639177 tgcaaggagctcaatggaactggagctccccaaggtatggg 15639217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 422
Target Start/End: Complemental strand, 40389612 - 40389556
Alignment:
Q  366 attttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||| |||||| | |||||||||| || ||| |||||||||||||||||    
T  40389612 attttcacctttggatgtaccgcatatatacgacaccttatatttatcttttaaaaa 40389556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 21665814 - 21665723
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| |||| |||||||| ||||||| | |||||||||||||||| ||||||||||||||||||| || | |||||||||||||||||||    
T  21665814 agggtggtttgtggttcctcatgtatacggtagtgattttcacattttgatgtatcacatatatacgacaccgtgtatttatcttttaaaaa 21665723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 38400786 - 38400877
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| ||||||| | |||||||||||| |||  ||||||| |||||||| | || |||||||||||||||||||||    
T  38400786 agggtggtttgaggttcctcatgtatacggtagtgattttcacctttgaatgtatcgcatatatatgacaccttgtatttatcttttaaaaa 38400877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 16227482 - 16227391
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||  |||||| || |||||||||||  | | | ||||||||||||||||| || |||||||||||||||||||||    
T  16227482 agggtggtttgaggttccttatgtatatagtagtgattttcatctatcggtgtatcacatatatacgacaccttgtatttatcttttaaaaa 16227391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 422
Target Start/End: Complemental strand, 13800657 - 13800567
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttca-catttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||||||||||||| |||||| || ||||||||||| | ||| | |||||| |||||||||| || ||| |||||||||||||||||    
T  13800657 ggtgatttgaggttcctcgtgtatatagtagtgattttcaccttttgggtgtatcgcatatatacggcaccttatatttatcttttaaaaa 13800567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 12134154 - 12134065
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaa 420  Q
    |||||| ||||||||||||  ||||||| | |||||||||||| ||| | |||||| ||||||||||  | |||||||||||||||||||    
T  12134154 agggtggtttgaggttcctaatgtatacggtagtgattttcacttttgggtgtatcgcatatatacggtaccttgtatttatcttttaaa 12134065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 463
Target Start/End: Complemental strand, 24035659 - 24035526
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttta-aaaatttaact 429  Q
    |||||| |||| | |||||| ||||| | | |||||||||||| ||||| |||||| ||| |||||| || ||||||||||||||||| ||||||||| |    
T  24035659 agggtggtttgcgattcctcatgtatgcggtagtgattttcacctttaggtgtatcgcatttatacggcaccttgtatttatcttttaaaaaatttaaat 24035560  T
Q  430 ataatattgttactttacaaaaaatacgctttta 463  Q
    | || ||||||  |||| || ||||||| |||||    
T  24035559 agaacattgttcttttaaaagaaatacgttttta 24035526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 412
Target Start/End: Original strand, 37182658 - 37182739
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttat 412  Q
    |||||||||||||||||||| ||||||| | |||||||||||| ||| | |||||  |||||||||| || |||||||||||    
T  37182658 agggtgatttgaggttcctcatgtatacggtagtgattttcacttttgggtgtattgcatatatacgacaccttgtatttat 37182739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 3155217 - 3155296
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | ||| |||| | |||||||||| || |||||||||||||||||||||    
T  3155217 ggttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 3155296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 422
Target Start/End: Complemental strand, 27506841 - 27506763
Alignment:
Q  344 gttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||||| ||||||||| ||| ||||| || ||| | |||| |||||||||||| || ||| |||||||||||||||||    
T  27506841 gttcctcatgtatacagtagtcatttttacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaa 27506763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 421
Target Start/End: Complemental strand, 28425816 - 28425734
Alignment:
Q  339 ttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaa 421  Q
    |||||||||||| | ||||  | |||||||||||||||| | ||||   |||||||||| || ||||||||||||||||||||    
T  28425816 ttgaggttcctcatatatatggtagtgattttcacatttgggtgtactgcatatatacgacaccttgtatttatcttttaaaa 28425734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 422
Target Start/End: Original strand, 16096998 - 16097087
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||| ||||||||||||| ||||||  | ||| |||||||| ||| | ||||   |||||||||| || |||||||||||||||||||||    
T  16096998 ggtggtttgaggttcctcatgtataaggtagtaattttcacctttgggtgtacatcatatatacggcaccttgtatttatcttttaaaaa 16097087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 9046029 - 9046108
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  9046029 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaa 9046108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 10762667 - 10762588
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| |||||||||||  || ||| |||||||||||||||||    
T  10762667 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatataccgcaccttatatttatcttttaaaaa 10762588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 12337550 - 12337471
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | | | |||| |||||||||| | || |||||||||||||||||||||    
T  12337550 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccacatatatatgacaccttgtatttatcttttaaaaa 12337471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 24410437 - 24410516
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  24410437 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaa 24410516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 29939964 - 29939885
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || |||||||||||||| ||||||    
T  29939964 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttgtatttatcttgtaaaaa 29939885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 417
Target Start/End: Complemental strand, 11912871 - 11912785
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt 417  Q
    |||||| ||||||||||||  ||||||| | |||||||||||  ||| |||||||  |||||||||| ||  |||||||||| ||||    
T  11912871 agggtggtttgaggttccttatgtatacggtagtgattttcatctttggatgtattgcatatatacggcactttgtatttatttttt 11912785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 34694013 - 34694054
Alignment:
Q  381 tgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||| |||||||||||| || |||||||||||||||||||||    
T  34694013 tgtaccacatatatacggcaccttgtatttatcttttaaaaa 34694054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 34716425 - 34716466
Alignment:
Q  381 tgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||| |||||||||||| || |||||||||||||||||||||    
T  34716425 tgtaccacatatatacggcaccttgtatttatcttttaaaaa 34716466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 21666079 - 21666039
Alignment:
Q  231 tgcaaggagctcaatgaaactggacctccctaaggtatggg 271  Q
    |||||||||||||||| |||||| |||||| ||||||||||    
T  21666079 tgcaaggagctcaatggaactgggcctccccaaggtatggg 21666039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 293 - 422
Target Start/End: Original strand, 38876 - 39005
Alignment:
Q  293 agtagtactactaagtactaccctattnnnnnnnttatagggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatat 392  Q
    ||||||||||||||||  ||||||| |       |||||||||| ||||||||||||| | ||||| | ||||||||||||||||   |||||| |||||    
T  38876 agtagtactactaagtgttaccctactaaaaaaattatagggtggtttgaggttcctcatatatacggtagtgattttcacatttgtgtgtatcgcatat 38975  T
Q  393 atacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||| || |||||||||||||||||||||    
T  38976 atacgacaccttgtatttatcttttaaaaa 39005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 422
Target Start/End: Original strand, 8420320 - 8420409
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||| ||||||||||||| | ||||| |||||||||||||||||| | ||||  ||||||||||| || |||||||||||||||||||||    
T  8420320 ggtggtttgaggttcctcgtatatacggcagtgattttcacatttgggtgtacaacatatatacggcaccttgtatttatcttttaaaaa 8420409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 417
Target Start/End: Complemental strand, 28689468 - 28689389
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt 417  Q
    |||||| || ||| ||||||| |||||||||||||| ||| ||| |||| |||||||||| || ||||||||||||||||    
T  28689468 tttgagatttctcatgtatacggcagtgattttcacctttggatatatcgcatatatacggcaccttgtatttatctttt 28689389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 8073440 - 8073361
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || |||||||||||||||||||||    
T  8073440 ggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaa 8073361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 47467688 - 47467767
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | | | |||||| |||||||||| || |||||||||||||||||||||    
T  47467688 ggttcctcatgtatacggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaa 47467767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 21582775 - 21582854
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | | | |||| | |||||||||| || |||||||||||||||||||||    
T  21582775 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 21582854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 43207339 - 43207261
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| |||||| | |||||||||| || ||| |||||||||||||||||    
T  43207339 ggttcctcatgtatacggtagtcattttcaccttt-gatgtaccgcatatatacggcaccttatatttatcttttaaaaa 43207261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 54619305 - 54619226
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | | | |||| | |||||||||| || |||||||||||||||||||||    
T  54619305 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 54619226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 37168372 - 37168450
Alignment:
Q  344 gttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||||| ||||||| | ||| |||||||| ||| | | || |||||||||||| || ||| |||||||||||||||||    
T  37168372 gttcctcatgtatacggtagtcattttcacctttgggtataccacatatatacggcaccttatatttatcttttaaaaa 37168450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 54407251 - 54407181
Alignment:
Q  352 tgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||||| | ||| |||||||| ||| |||||| | |||||||||| || ||| |||||||||||||||||    
T  54407251 tgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaa 54407181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 422
Target Start/End: Complemental strand, 38681193 - 38681116
Alignment:
Q  345 ttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||| | ||| |||||||| | | |||||| | |||| ||||| || |||||||||||||||||||||    
T  38681193 ttcctcatgtatacggtagtcattttcacctctggatgtaccgcatacatacggcaccttgtatttatcttttaaaaa 38681116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 422
Target Start/End: Original strand, 49393085 - 49393172
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    ||||||||||||||| || ||||||| | ||| ||||| || ||| | |||| |||||||||||| |  |||||||||||||||||||||    
T  49393085 ggtgatttgaggttc-tcatgtatacggtagtaatttttacctttgggtgta-cacatatatacgacgccttgtatttatcttttaaaaa 49393172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 42453435 - 42453487
Alignment:
Q  370 tcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||| ||||| |||||| |||||||| | || |||||||||||||||||||||    
T  42453435 tcacctttaggtgtatcgcatatatatgacaccttgtatttatcttttaaaaa 42453487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 52374657 - 52374729
Alignment:
Q  340 tgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttat 412  Q
    |||||||| || ||||||| | |||||||||| | |||||||||||| ||| |||||| ||  ||||||||||    
T  52374657 tgaggttcttcatgtatacggtagtgattttctcctttagatgtatcgcatctatacgacacattgtatttat 52374729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 453
Target Start/End: Complemental strand, 54574934 - 54574818
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt-aaaaatttaactataatat 436  Q
    ||||||||||||| ||||||  | ||||||||| || ||| | |||| | ||||||||||  | ||||||||||| |||| |||||||||| || || ||    
T  54574934 tttgaggttcctcatgtatatggtagtgatttttacttttgggtgtaccgcatatatacggtaccttgtatttatattttgaaaaatttaaatagaacat 54574835  T
Q  437 tgttactttacaaaaaa 453  Q
    ||||  |||| ||||||    
T  54574834 tgttcttttaaaaaaaa 54574818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 372 - 281
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| |||||||||| || ||||||| | |||||||||||||||| | |||| | |||||||||| || |||||||||||||||||||||    
T  372 agggtggtttgaggttcatcatgtatacggtagtgattttcacatttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaa 281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 38547149 - 38547058
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||||||| ||||||    |||||||||||||||| | |||| |||||||||||| || |||||||||||||||||||||    
T  38547149 agggtggtttgaggttcctcatgtatatgatagtgattttcacatttgggtgtaccacatatatacggcaccttgtatttatcttttaaaaa 38547058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 455
Target Start/End: Original strand, 45758496 - 45758619
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt-aaaaatttaactat 431  Q
    |||| ||||||||||||| ||||||| | |||||||||||| ||| ||||||| ||||||||||  || |||| ||||||||||| |||||||||| ||     
T  45758496 ggtggtttgaggttcctcatgtatacggtagtgattttcacctttggatgtataacatatatacaacaccttgcatttatcttttaaaaaatttaaatag 45758595  T
Q  432 aatattgttactttacaaaaaata 455  Q
    || ||||||  |||| ||||||||    
T  45758596 aacattgttcttttaaaaaaaata 45758619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 455
Target Start/End: Original strand, 6221678 - 6221801
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaatttaacta 430  Q
    |||||| ||||||||||||| | |||||   | |||||||||||||| |||||| | | |||||||| ||  ||||||||||||||||||||||||| ||    
T  6221678 agggtggtttgaggttcctcatatatacgataatgattttcacattttgatgtaccgcttatatacggcacattgtatttatcttttaaaaatttaaata 6221777  T
Q  431 taatattgttactttacaaaaaata 455  Q
     || |||||| ||||| ||||||||    
T  6221778 gaacattgtt-ctttaaaaaaaata 6221801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 423
Target Start/End: Complemental strand, 10926068 - 10925975
Alignment:
Q  330 tagggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaat 423  Q
    ||||||||||||||| ||||| ||||||| | |||||||||||  ||| |||| ||| |||||||||| ||  |||||||||| ||||||||||    
T  10926068 tagggtgatttgaggatcctcatgtatacggtagtgattttcatctttggatgcatctcatatatacggcacattgtatttattttttaaaaat 10925975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 453
Target Start/End: Complemental strand, 39134836 - 39134712
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt--aaaaatttaac 428  Q
    |||||| ||||||||||||| ||||||||| ||||||| |||| ||| | |||||  |||||||||  || ||||||||||||||||  ||||||||||     
T  39134836 agggtggtttgaggttcctcatgtatacagtagtgattatcacctttgggtgtattgcatatatacagcaccttgtatttatctttttaaaaaatttaaa 39134737  T
Q  429 tataatattgttactttacaaaaaa 453  Q
    || || ||||||  |||| ||||||    
T  39134736 tagaacattgttcttttaaaaaaaa 39134712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 422
Target Start/End: Original strand, 50881440 - 50881521
Alignment:
Q  341 gaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||||| ||||||| | ||| |||||||| | |||||||| | |||||||||| || |||||||||||||||||||||    
T  50881440 gaggttcctcatgtatactgtagtcattttcacctctagatgtaccgcatatatacgacaccttgtatttatcttttaaaaa 50881521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 26803948 - 26804036
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||||| ||| ||||||| | |||||||||||| ||    |||||| |||||||||| || |||||||||||||||||||||    
T  26803948 agggtggtttgaggtttctcatgtatacggtagtgattttcaccttg---tgtatcgcatatatacgacatcttgtatttatcttttaaaaa 26804036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 9173124 - 9173045
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| |||||| | |||||||||| || ||| |||||||||||||||||    
T  9173124 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaa 9173045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 9181106 - 9181027
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| |||||| | |||||||||| || ||| |||||||||||||||||    
T  9181106 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaa 9181027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 422
Target Start/End: Original strand, 6771801 - 6771882
Alignment:
Q  341 gaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||||| ||||||| | ||| |||||||| | | | |||| | |||||||||| || |||||||||||||||||||||    
T  6771801 gaggttcctcgtgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 6771882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 422
Target Start/End: Complemental strand, 43235881 - 43235792
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||| ||||||||||||| |||||||   |||||||||||| ||| | ||||   |||||||||| || ||||||||||||||| |||||    
T  43235881 ggtggtttgaggttcctcatgtatacgatagtgattttcacctttgggtgtacatcatatatacgacatcttgtatttatctttaaaaaa 43235792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 422
Target Start/End: Original strand, 38853530 - 38853613
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||||| || ||||||| | |||||||||||| ||| ||| ||  ||||||||||| || |||||||||||| ||||||||    
T  38853530 tttgaggttc-tcatgtatacggtagtgattttcacctttggatatacaacatatatacgacaccttgtatttatcatttaaaaa 38853613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 5316692 - 5316771
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | | | |||| | |||||||||| || |||||||||||||||||||||    
T  5316692 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 5316771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 23185439 - 23185518
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| | | | |||| | |||||||||| || |||||||||||||||||||||    
T  23185439 ggttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 23185518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 27559649 - 27559728
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  27559649 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaa 27559728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 440
Target Start/End: Original strand, 5533314 - 5533423
Alignment:
Q  333 ggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttt--aaaaatttaacta 430  Q
    |||| |||||| |||||| ||||||| | |||||||||||| |||   ||||   |||||||||| || ||||| ||||||||||  |||||||||| ||    
T  5533314 ggtggtttgagtttcctcatgtatacggtagtgattttcacctttgattgtacatcatatatacggcaccttgtgtttatcttttaaaaaaatttaaata 5533413  T
Q  431 taatattgtt 440  Q
     |||||||||    
T  5533414 gaatattgtt 5533423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 422
Target Start/End: Original strand, 16140069 - 16140146
Alignment:
Q  345 ttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| ||||||| | ||| |||||||| | ||| |||| | |||||||||  || |||||||||||||||||||||    
T  16140069 ttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacaacaccttgtatttatcttttaaaaa 16140146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 21741000 - 21740959
Alignment:
Q  381 tgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||| |||||||||| || |||||||||||||||||||||    
T  21741000 tgtatcgcatatatacggcaccttgtatttatcttttaaaaa 21740959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 427
Target Start/End: Original strand, 35392301 - 35392366
Alignment:
Q  362 agtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaatttaa 427  Q
    |||||||||||| ||| ||| || | |||||||||| || |||||||||||| || ||||||||||    
T  35392301 agtgattttcacctttggatataccgcatatatacggcaccttgtatttatccttaaaaaatttaa 35392366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 425
Target Start/End: Original strand, 1350 - 1437
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaattt 425  Q
    ||||||||||||| |||||||   |||||||||||||||| | |||||  |||||||||  || ||| ||||||||||||||||||||    
T  1350 tttgaggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattt 1437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 427
Target Start/End: Complemental strand, 206596 - 206506
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttta-aaaatttaa 427  Q
    ||||||||||||| ||||||| | ||||||||||||  || | |||| | |||||||||| || ||||||||||||||||| |||||||||    
T  206596 tttgaggttcctcatgtatacggtagtgattttcaccattgggtgtaccgcatatatacgacaccttgtatttatcttttacaaaatttaa 206506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 173617 - 173533
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||||||||  |||||| | ||||||||| || ||| | |||||| ||||||||||  | |||||||||||||||||||||    
T  173617 tttgaggttcctcacgtatacggtagtgatttttacctttgggtgtatcgcatatatacggtaccttgtatttatcttttaaaaa 173533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 440
Target Start/End: Complemental strand, 24107 - 23997
Alignment:
Q  331 agggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatctttta-aaaatttaact 429  Q
    |||||| |||||| |||||  || |||| | | |||||||||| ||| | |||| | |||||||||| || ||||||||||||||||| ||||||||| |    
T  24107 agggtggtttgagattccttatgcatacggtaatgattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaat 24008  T
Q  430 ataatattgtt 440  Q
    | |||||||||    
T  24007 agaatattgtt 23997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 419
Target Start/End: Complemental strand, 351441 - 351360
Alignment:
Q  338 tttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaa 419  Q
    |||||||| |||| ||||| ||| || ||||||||| ||| | ||||  ||||||||||| || ||||||||||||||||||    
T  351441 tttgaggtacctcgtgtattcagtagcgattttcacctttgggtgtacaacatatatacgacaccttgtatttatcttttaa 351360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 106539 - 106618
Alignment:
Q  343 ggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtatttatcttttaaaaa 422  Q
    |||||||| ||||||| | ||| |||||||| ||| | |||| | |||||||||| || ||| |||||||||||||||||    
T  106539 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaa 106618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 16015 - 16095
Alignment:
Q  330 tagggtgatttgaggttcctcctgtatacagcagtgattttcacatttagatgtatcacatatatacgtcaacttgtattt 410  Q
    ||||||| ||||||||| ||| ||||||| | |||||||||||  ||| |||||| | |||| ||||| || |||||||||    
T  16015 tagggtggtttgaggtttctcatgtatacggtagtgattttcatctttggatgtaccgcatacatacgacatcttgtattt 16095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University