View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5417_low_10 (Length: 344)
Name: NF5417_low_10
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5417_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 327
Target Start/End: Original strand, 4882820 - 4883140
Alignment:
| Q |
8 |
tgaaatgaatgacataaccacacatcatcatcaaaatcatatgtatctaacattagtgcccgaactccattctacaaa-ttaaccattatagaaacaaaa |
106 |
Q |
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| T |
4882820 |
tgaaatgaatgacataaccacacatcatcatcaaaatcatatgtatctaacattagtgcccgaactccattctacaaaattaaccattattaaaacaaaa |
4882919 |
T |
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| Q |
107 |
ttgtgagtgaaattaacattttctataaacttccaaaaaatatgaaaattcatcatattttaaccatataatatatttgtaatttgaatagcatacgtta |
206 |
Q |
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| T |
4882920 |
ttgtgagtgaaattaacattgtctataaactttaaaaaaaataaaaaaatcataatattttaaccatataatatatatgtaatttgaatagcatacgtta |
4883019 |
T |
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| Q |
207 |
agttgttgggtgatagtgtcttcttggttggtgatagtaattcgaggcacacctgtgtgagatggttccccttcaattgcaaatgcattatgcgttgtca |
306 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4883020 |
agttgttgggtgatggtgtcttcttggttggtgatagtaattcgaggcacacctgtgtgagatggttccccttcaattgcaaatgcattatgcgttgtca |
4883119 |
T |
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| Q |
307 |
aaaatgcatatttattgaatg |
327 |
Q |
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||||||||||||||||||||| |
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| T |
4883120 |
aaaatgcatatttattgaatg |
4883140 |
T |
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