View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5417_low_12 (Length: 322)

Name: NF5417_low_12
Description: NF5417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5417_low_12
NF5417_low_12
[»] chr1 (1 HSPs)
chr1 (1-322)||(2989434-2989759)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 2989434 - 2989759
Alignment:
Q  1 ctagatttctagtctctgtattatgttttcacgacagtatgtctattaataaggtgatagcgaacattgaaaaattaatttctacaattacgtgttgatg 100  Q
    |||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  2989434 ctaggtttctattctctgtattatgttttcatgacagtatgtctattaataaggtgatagctaacattgaaaaattaatttctacaattacgtgtcgatg 2989533  T
Q  101 atgatccatatacaccaacaaaaaagaattatttattatacttcttatgcgcacatacacatagata----cttctcgtattgaatgtgaaaaaattcgt 196  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  2989534 atgatccatatacaccaaggaaaaagaattatttattatacttcttatgcgcacatacacatagatatatacttctcgtattgaatgtgaaaaaattcgt 2989633  T
Q  197 tttggctattgtcccatgcgctaggcgcatggacagctggctattgttactatgtttgttgttgttattgtttgagattactttgatactggcttatatt 296  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2989634 tttggctattgtcccatgcgctaggcgcatggactgctggctattgttactatgtttgttgttgttattgtttgagattactttgatactggcttatgtt 2989733  T
Q  297 gctctacacatctaacgtaatttatt 322  Q
    |||| |||||||||||||||||||||    
T  2989734 gctccacacatctaacgtaatttatt 2989759  T

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